Gene detail

Detail information of GWHGAAZE016871

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004288325.1	0	PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|Q9FMJ0\|P4KB1_ARATH	0	Phosphatidylinositol 4-kinase beta 1
trEMBL	tr\|A0A067L2F3\|A0A067L2F3_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP42612.1}
TAIR10	AT5G64070.1	1E-177	phosphatidylinositol 4-OH kinase beta1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	84545717	84557060	+
GWHAAZE00000004	mRNA	84545717	84557060	+
GWHAAZE00000004	exon	84545717	84545757	+
GWHAAZE00000004	exon	84545841	84545898	+
GWHAAZE00000004	exon	84546791	84546886	+
GWHAAZE00000004	exon	84547207	84547329	+
GWHAAZE00000004	exon	84549337	84549406	+
GWHAAZE00000004	exon	84550999	84551096	+
GWHAAZE00000004	exon	84551181	84551285	+
GWHAAZE00000004	exon	84553648	84553701	+
GWHAAZE00000004	exon	84554588	84554731	+
GWHAAZE00000004	exon	84554865	84554918	+
GWHAAZE00000004	exon	84555029	84555103	+
GWHAAZE00000004	exon	84556383	84556466	+
GWHAAZE00000004	exon	84556959	84557060	+
GWHAAZE00000004	CDS	84545717	84545757	+
GWHAAZE00000004	CDS	84545841	84545898	+
GWHAAZE00000004	CDS	84546791	84546886	+
GWHAAZE00000004	CDS	84547207	84547329	+
GWHAAZE00000004	CDS	84549337	84549406	+
GWHAAZE00000004	CDS	84550999	84551096	+
GWHAAZE00000004	CDS	84551181	84551285	+
GWHAAZE00000004	CDS	84553648	84553701	+
GWHAAZE00000004	CDS	84554588	84554731	+
GWHAAZE00000004	CDS	84554865	84554918	+
GWHAAZE00000004	CDS	84555029	84555103	+
GWHAAZE00000004	CDS	84556383	84556466	+
GWHAAZE00000004	CDS	84556959	84557060	+

Transcript Sequence
>GWHTAAZE016891 ATGGTCACCTGGGTCAAATCCATCCCAGCAACTCAGATCTGGCCTAGGTCTGGTGAAACTCCCGTGCTGAGAGGGCTTGGTAAACCCCCTCCCAATAGGTTGTTGTTAACACAGGCTGCTGCATTAAAAGGAGAAGCACCTCCTGGACTCCCTTTAAAAGGGGCTGGTCAGGATTCATCAGATGCACAACCAAAGGTCGCAAATGGTGGTATTCCCAAGGCAAGTGACGCTTTATCTGGTGAGCTTTGGGAGATAAAAAAGGATAGAATACGTAAAGCCTCGGTCTATGGAAAGTTACCTGGCTGGGACTTGCGCTCTATTATTGTGAAGAGCGGTGATGATTGTCGGCAGGAACATCTTGCTGTTCAACTTATTTCTCATTTTTATGATATATTCCAGGAGGCTGGTCTCCCCCTTTGGTTGCGGCCTTATGAAGTCCTGGTTACTTCTTCGTACACAGCACTCATTGAAACAATTCCGGATACTGCATCACTTCATTCTCTTAAAAGTAGATTCCCCAGTATCAAAAGTTTGCGCGACTTTTTCATTGCCAAGTATGAAGAAGATTCACCAAATTTTAAGCTTGCTCAGAGAAACTTTGTTGAAAGTATGGCTGGATATTCCCTAGTCTGCTATCTTTTACAGGTAAAGGATAGGCACAATGGCAACCTCTTGTTGGACGAAGAAGGTCACATCATTCACATTGATTTTGGCTTCATGCTCTCCAATTCACCTGGTGGTGTAAATTTTGAGAGTGCTCCATTTAAGTTAACCCGTGAACTTCTTGAGGTCATGGATTCTGATGCTGAGGGAGTTCCAAGCGAGTTCTTTGACTATTTTAAAGTTTTATGCATTCAAGGATTCCTAACATGTCGTAAGCATGCAGAACGTATAATTCTTCTTGTTGAGATGTTGCAGGATTCTGGTTTCCCATGTTTTAAAGGTGGTCCACGGACAATACACAATTTGAGGAAGCGATTTCATCTAAGTTTAACTGAAGAGCAATGCGTGTCGTTGGTGCTTTCTCTGATCAGCAGCAGCTTAGATGCATGGCGGACGCGCCAATACGATTATTATCAGAGGGTATTAAATGGGATATTATAA

Network for GWHGAAZE016871

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00454.28	PI3_PI4_kinase	106	171	2.60E-06
PF00454.28	PI3_PI4_kinase	177	313	6.80E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19801	PI4KB	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Phosphatidylinositol signaling system	map04070

Gene Ontology

GO term	Ontology	Name
GO:0016301	molecular_function	kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.121
	SRR3591706	second leaf	8.656
	SRR3591707	mature leaf	10.531
	SRR3591708	Shoot apex	8.796
	SRR3591709	Stem	19.204
	SRR3591710	White floral bud	17.766
	SRR3591711	White flower	17.404
	SRR3591712	Green floral bud	14.485
	SRR3591713	Yellow flower	17.636
SRP173429	SRR8316895	Juvenile bud stage	8.543
	SRR8316896	Juvenile bud stage	11.693
	SRR8316897	Juvenile bud stage	6.217
	SRR8316894	Third green stage	4.999
	SRR8316900	Third green stage	9.683
	SRR8316901	Third green stage	13.415
	SRR8316898	Complete white stage	6.012
	SRR8316899	Complete white stage	18.447
	SRR8316903	Complete white stage	11.831
	SRR8316902	Silver flowering stage	9.618
	SRR8316904	Silver flowering stage	10.851
	SRR8316905	Silver flowering stage	5.544
	SRR8316906	Gold flowering stage	17.170
	SRR8316907	Gold flowering stage	17.376
	SRR8316908	Gold flowering stage	17.984
SRP132670	SRR6706286	Control	11.655
	SRR6706287	Light intensity 50%	12.682
	SRR6706288	Light intensity 20%	13.266
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.056
	CNS0095593	Slightly white alabastrum(diploid) 2	7.296
	CNS0095594	Slightly white alabastrum(diploid) 3	8.448
	CNS0095595	Whole white alabastrum(diploid) 2	7.048
	CNS0095596	Whole white alabastrum(diploid) 3	8.208
	CNS0095597	Whole white alabastrum(diploid) 4	7.374
	CNS0095598	Silvery flower (diploied) 1	8.064
	CNS0095599	Silvery flower (diploied) 2	10.618
	CNS0095600	Silvery flower (diploied) 3	18.886
	CNS0095601	Golden flower (diploid) 1	7.456
	CNS0095602	Golden flower (diploid) 2	18.870
	CNS0095603	Golden flower (diploid) 3	18.064
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.067
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.396
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.150
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.015
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.319
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.209
	CNS0095610	Silvery flower (tetraploid) 1	20.286
	CNS0095611	Silvery flower (tetraploid) 2	19.449
	CNS0095612	Silvery flower (tetraploid) 3	22.311
	CNS0095613	Golden flower (tetraploid) 1	11.728
	CNS0095614	Golden flower (tetraploid) 2	18.358
	CNS0095615	Golden flower (tetraploid) 3	22.077
CRA001975	CRR073297	Stem 1	11.497
	CRR073298	Stem 2	10.089
	CRR073299	Stem 3	9.346
	CRR073300	Leaf 1	14.776
	CRR073301	Leaf 2	10.923
	CRR073302	Leaf 3	9.783
	CRR073303	Juvenile bud 1	9.539
	CRR073304	Juvenile bud 2	8.873
	CRR073305	Juvenile bud 3	18.169
	CRR073306	Third green 1	8.262
	CRR073307	Third green 2	8.086
	CRR073308	Third green 3	8.794
	CRR073309	Second white 1	7.268
	CRR073310	Second white 2	11.403
	CRR073311	Second white 3	13.899
	CRR073312	Silver flowering 1	8.775
	CRR073313	Silver flowering 2	9.350
	CRR073314	Silver flowering 3	8.376
	CRR073315	Gold flowering 1	4.556
	CRR073316	Gold flowering 2	8.631
	CRR073317	Gold flowering 3	5.538
	CRR073318	Tawny withering 1	14.458
	CRR073319	Tawny withering 2	14.441
	CRR073320	Tawny withering 3	14.484