Gene detail

Detail information of GWHGAAZE016863

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011084696.1	PREDICTED: V-type proton ATPase subunit H-like [Sesamum indicum]
Swissprot	tr\|Q9LX65\|VATH_ARATH	V-type proton ATPase subunit H
trEMBL	tr\|A0A061F6S3\|A0A061F6S3_THECC	Vacuolar ATP synthase subunit H family protein isoform 2 {ECO:0000313\|EMBL:EOY10174.1}
TAIR10	AT3G42050.1	vacuolar ATP synthase subunit H family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	84352362	84371903	+
GWHAAZE00000004	mRNA	84352362	84371903	+
GWHAAZE00000004	exon	84352362	84352505	+
GWHAAZE00000004	exon	84356234	84356320	+
GWHAAZE00000004	exon	84357691	84357805	+
GWHAAZE00000004	exon	84357883	84357955	+
GWHAAZE00000004	exon	84361275	84361340	+
GWHAAZE00000004	exon	84361429	84361546	+
GWHAAZE00000004	exon	84363265	84363426	+
GWHAAZE00000004	exon	84363924	84364049	+
GWHAAZE00000004	exon	84364483	84364608	+
GWHAAZE00000004	exon	84370215	84370394	+
GWHAAZE00000004	exon	84371298	84371903	+
GWHAAZE00000004	CDS	84352362	84352505	+
GWHAAZE00000004	CDS	84356234	84356320	+
GWHAAZE00000004	CDS	84357691	84357805	+
GWHAAZE00000004	CDS	84357883	84357955	+
GWHAAZE00000004	CDS	84361275	84361340	+
GWHAAZE00000004	CDS	84361429	84361546	+
GWHAAZE00000004	CDS	84363265	84363426	+
GWHAAZE00000004	CDS	84363924	84364049	+
GWHAAZE00000004	CDS	84364483	84364608	+
GWHAAZE00000004	CDS	84370215	84370394	+
GWHAAZE00000004	CDS	84371298	84371546	+
GWHAAZE00000004	three_prime_UTR	84371547	84371903	+

Transcript Sequence
>GWHTAAZE016883 ATGTTCAATTTTGTGAAGGTTCTGGAGAGGGATATTCCATGGGAGACGTACATGAGTACTAAGCTAATCACAGGAACAGGCCTTCAGCTCTTAAGGCGTTATGACAAAAAACCTGAAGGTTTCAAAGCTCAGTTGCTGGAAGATTGTCATGGATCTTCCTTTTCGTCCCAATCATTGGACCCAATAGCGGCTTATGGGCATTATGATGCTTCAGTTTTGGTGAACTATCAACAACTCTTACAGGATGGCCCAGCTTATGTTCGTGTCTTTATTAGCATTTTGCGTGACATATTCAAGGAAGAAACAGTTGAGTATGTTCTAGCTTTGATTGAGGAAATGTTTACAGCAAATGCAAATAGAGCCAGATTATTCCACGACAAGTCTCTTGAAGATGAAGATATTTACGAACCTTTCCTAAGATTGCTTTTGAAAGGAAACTGGTTTATACAAGAGAAGAGCTGTAAGATACTTTCCCAGATAGTAAGTGCTAGGCCAAAAGATCAGAATGTTGGCACCTCAAATGGAGAAGCCTCAAATTCAAAGAAGAAATCCACTACTATTGATGATGTTTTGAAAGCACTAGTGGAGTGGTTCTGCGCTCAGCTGAAGAAGCCTTCTCATCCAAGCCAGGCCATTCCAACAGTAATCAATTGCCTAGCAAGCTTATTGAAGGAACCTGTTGTCAGAGCTTCATTTGTTCAAGCAGATGGAGTCAAGCTGCTTGTTCCTCTAATTTCTCCAGCATCAACTCAACAGTCCATGCAGCTCCTTTATGAAACATGTCTCTGCGTTTGGCTTTTGTCATACTATGAACCTGCGGTCGAGTACTTGGCTACTTCTAGAGCATTGTCACGATTAATAGACGTCGTTAAAGGTTCCACCAAGGAGAAGGTTGTTAGGGTGGTGGTTTTGACACTCAAGAACTTGCTACCAAAAGGGACTTTCGGCGCTCAGATGGTCGATCTTGGACTGCCACAAATTGTTCAGAATTTGAAAGCTCAAGCATGGAGTGATGAGGATCTGTTGGAGGCTCTAAATCAATTGGAAGAAGGACTAAAAGATAACATTAAGAAATTGAGTTCTTTTGACAAGTACAGGCAGGAAATCCTTCTCGGCCATCTTGACTGGTCCCCAATGCACAAAGATCCTATGTTCTGGCGTGAAAACATTACCCGCTTTGAAGAGAATGATTTCCAGGTCCTAAGGGTCCTCATTACAATCTTGGACACATCAAGTGACCCGAGAGCACTAGCCGTGGCTTGTTTCGACCTCTCGCAGTTCATACAGTACCATCAAGCGGGGCGGGTCATAGTGACCGACCTTAAAGCAAAGGAAAGGGTTATGAAATTGATGAACCACGAGAATGCCGAGGTTACCAAAAATGCTCTCCTCTGCATCCAACGGCTCTTCCTCGGTGCCAAGTATGCGAGCTTTTTGCAGGCATAAGTTATTATTATATATATTTATTTGAGGAAACTTATTTATTGCAAGTTTGTTGAACCGGAAGAATGAGAGAGTTTGGCTGTGCAGCAGTAGTTTTTATATTTGGTCTTAATTAATAAGCGTAATGCCAGTAATGTATGTATGATAATTTATCTATTGTTCTTCTTTCTTCGGCTACCTCGTGAATGAATTGGACAAATTATTATTTGTTTTTGTGAAATTCTGCAATAAATTCGACGTTTTAGTTGTTTTAACTTTTTCCTTGCAGAGAGTGATCAGTTTTGGTAATCGGATTGATTTAATTAAATGTATTTGGTGCACATTATTGGATTTCAGTTTGTGAGAGTGGTTTGAGAGTTT

Network for GWHGAAZE016863

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03224.15	V-ATPase_H_N	69	352	2.20E-66
PF11698.9	V-ATPase_H_C	358	470	5.10E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02144	ATPeV1H	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		mTOR signaling pathway	map04150
		Phagosome	map04145
		Lysosome	map04142
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:1902600	biological_process	proton transmembrane transport
GO:0000221	cellular_component	vacuolar proton-transporting V-type ATPase, V1 domain
GO:0005515	molecular_function	protein binding
GO:0046961	molecular_function	proton-transporting ATPase activity, rotational mechanism

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	110.982
	SRR3591706	second leaf	50.647
	SRR3591707	mature leaf	30.651
	SRR3591708	Shoot apex	68.214
	SRR3591709	Stem	63.661
	SRR3591710	White floral bud	71.792
	SRR3591711	White flower	74.709
	SRR3591712	Green floral bud	101.263
	SRR3591713	Yellow flower	60.215
SRP173429	SRR8316895	Juvenile bud stage	55.038
	SRR8316896	Juvenile bud stage	72.221
	SRR8316897	Juvenile bud stage	38.651
	SRR8316894	Third green stage	34.673
	SRR8316900	Third green stage	108.185
	SRR8316901	Third green stage	96.377
	SRR8316898	Complete white stage	45.573
	SRR8316899	Complete white stage	104.053
	SRR8316903	Complete white stage	51.126
	SRR8316902	Silver flowering stage	29.074
	SRR8316904	Silver flowering stage	43.545
	SRR8316905	Silver flowering stage	19.795
	SRR8316906	Gold flowering stage	54.783
	SRR8316907	Gold flowering stage	55.145
	SRR8316908	Gold flowering stage	63.926
SRP132670	SRR6706286	Control	59.357
	SRR6706287	Light intensity 50%	63.597
	SRR6706288	Light intensity 20%	71.082
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	74.694
	CNS0095593	Slightly white alabastrum(diploid) 2	89.435
	CNS0095594	Slightly white alabastrum(diploid) 3	81.337
	CNS0095595	Whole white alabastrum(diploid) 2	84.065
	CNS0095596	Whole white alabastrum(diploid) 3	90.447
	CNS0095597	Whole white alabastrum(diploid) 4	82.191
	CNS0095598	Silvery flower (diploied) 1	46.904
	CNS0095599	Silvery flower (diploied) 2	50.350
	CNS0095600	Silvery flower (diploied) 3	75.208
	CNS0095601	Golden flower (diploid) 1	43.206
	CNS0095602	Golden flower (diploid) 2	58.815
	CNS0095603	Golden flower (diploid) 3	58.437
	CNS0095604	Slightly white alabastrum(tetraploid) 1	103.791
	CNS0095605	Slightly white alabastrum(tetraploid) 2	85.564
	CNS0095606	Slightly white alabastrum(tetraploid) 3	115.129
	CNS0095607	Whole white alabastrum(tetraploid) 1	86.023
	CNS0095608	Whole white alabastrum(tetraploid) 2	86.178
	CNS0095609	Whole white alabastrum(tetraploid) 3	111.152
	CNS0095610	Silvery flower (tetraploid) 1	77.108
	CNS0095611	Silvery flower (tetraploid) 2	63.612
	CNS0095612	Silvery flower (tetraploid) 3	65.089
	CNS0095613	Golden flower (tetraploid) 1	38.827
	CNS0095614	Golden flower (tetraploid) 2	55.671
	CNS0095615	Golden flower (tetraploid) 3	46.918
CRA001975	CRR073297	Stem 1	66.921
	CRR073298	Stem 2	69.078
	CRR073299	Stem 3	73.627
	CRR073300	Leaf 1	81.859
	CRR073301	Leaf 2	78.903
	CRR073302	Leaf 3	99.599
	CRR073303	Juvenile bud 1	88.919
	CRR073304	Juvenile bud 2	92.475
	CRR073305	Juvenile bud 3	61.898
	CRR073306	Third green 1	50.572
	CRR073307	Third green 2	52.752
	CRR073308	Third green 3	55.300
	CRR073309	Second white 1	33.214
	CRR073310	Second white 2	33.619
	CRR073311	Second white 3	22.550
	CRR073312	Silver flowering 1	20.741
	CRR073313	Silver flowering 2	18.044
	CRR073314	Silver flowering 3	20.675
	CRR073315	Gold flowering 1	28.645
	CRR073316	Gold flowering 2	33.805
	CRR073317	Gold flowering 3	25.038
	CRR073318	Tawny withering 1	58.885
	CRR073319	Tawny withering 2	46.298
	CRR073320	Tawny withering 3	63.737