Detail information of GWHGAAZE016748


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009630740.10PREDICTED: lysine-specific demethylase JMJ25-like [Nicotiana tomentosiformis]
Swissprottr|Q9SSE9|JMJ25_ARATH5E-161Lysine-specific demethylase JMJ25
trEMBLtr|M5WFT5|M5WFT5_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ12151.1} (Fragment)
TAIR10AT4G00990.11E-154Transcription factor jumonji (jmjC) domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8196937581983966-
GWHAAZE00000004mRNA8196937581983966-
GWHAAZE00000004exon8196937581969481-
GWHAAZE00000004exon8197325381973331-
GWHAAZE00000004exon8197368781973772-
GWHAAZE00000004exon8197436881974487-
GWHAAZE00000004exon8197501681975101-
GWHAAZE00000004exon8197519581975267-
GWHAAZE00000004exon8197737281977382-
GWHAAZE00000004exon8197747281977904-
GWHAAZE00000004exon8197900581979334-
GWHAAZE00000004exon8198012881980917-
GWHAAZE00000004exon8198214181982325-
GWHAAZE00000004exon8198241281982511-
GWHAAZE00000004exon8198261381982734-
GWHAAZE00000004exon8198307381983809-
GWHAAZE00000004exon8198390081983966-
GWHAAZE00000004CDS8198390081983966-
GWHAAZE00000004CDS8198307381983809-
GWHAAZE00000004CDS8198261381982734-
GWHAAZE00000004CDS8198241281982511-
GWHAAZE00000004CDS8198214181982325-
GWHAAZE00000004CDS8198012881980917-
GWHAAZE00000004CDS8197900581979334-
GWHAAZE00000004CDS8197747281977904-
GWHAAZE00000004CDS8197737281977382-
GWHAAZE00000004CDS8197519581975267-
GWHAAZE00000004CDS8197501681975101-
GWHAAZE00000004CDS8197436881974487-
GWHAAZE00000004CDS8197368781973772-
GWHAAZE00000004CDS8197328381973331-
GWHAAZE00000004three_prime_UTR8197325381973282-
GWHAAZE00000004three_prime_UTR8196937581969481-
Transcript Sequence

Network for GWHGAAZE016748

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02373.23JmjC9259873.50E-13
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyJumonji

KEGG pathway

KO Enzyme pathway mapID
K15601KDM3 Thermogenesis map04714

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.288
SRR3591706second leaf14.917
SRR3591707mature leaf12.182
SRR3591708Shoot apex30.698
SRR3591709Stem22.386
SRR3591710White floral bud20.886
SRR3591711White flower24.515
SRR3591712Green floral bud21.857
SRR3591713Yellow flower17.380
SRP173429 SRR8316895Juvenile bud stage 14.175
SRR8316896Juvenile bud stage 19.362
SRR8316897Juvenile bud stage 12.930
SRR8316894Third green stage 8.576
SRR8316900Third green stage 18.564
SRR8316901Third green stage 19.281
SRR8316898Complete white stage 3.664
SRR8316899Complete white stage 14.522
SRR8316903Complete white stage 13.072
SRR8316902Silver flowering stage6.821
SRR8316904Silver flowering stage13.624
SRR8316905Silver flowering stage6.060
SRR8316906Gold flowering stage 17.352
SRR8316907Gold flowering stage 17.461
SRR8316908Gold flowering stage 21.264
SRP132670SRR6706286Control17.749
SRR6706287Light intensity 50%19.845
SRR6706288Light intensity 20%19.886
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.222
CNS0095593Slightly white alabastrum(diploid) 212.609
CNS0095594Slightly white alabastrum(diploid) 313.631
CNS0095595Whole white alabastrum(diploid) 212.274
CNS0095596Whole white alabastrum(diploid) 311.133
CNS0095597Whole white alabastrum(diploid) 412.539
CNS0095598Silvery flower (diploied) 117.304
CNS0095599Silvery flower (diploied) 215.077
CNS0095600Silvery flower (diploied) 318.681
CNS0095601Golden flower (diploid) 115.621
CNS0095602Golden flower (diploid) 217.123
CNS0095603Golden flower (diploid) 319.094
CNS0095604Slightly white alabastrum(tetraploid) 116.804
CNS0095605Slightly white alabastrum(tetraploid) 213.606
CNS0095606Slightly white alabastrum(tetraploid) 327.663
CNS0095607Whole white alabastrum(tetraploid) 112.683
CNS0095608Whole white alabastrum(tetraploid) 29.597
CNS0095609Whole white alabastrum(tetraploid) 317.660
CNS0095610Silvery flower (tetraploid) 122.105
CNS0095611Silvery flower (tetraploid) 219.016
CNS0095612Silvery flower (tetraploid) 315.210
CNS0095613Golden flower (tetraploid) 112.277
CNS0095614Golden flower (tetraploid) 217.419
CNS0095615Golden flower (tetraploid) 314.637
CRA001975CRR073297Stem 123.853
CRR073298Stem 221.479
CRR073299Stem 317.952
CRR073300Leaf 119.185
CRR073301Leaf 218.508
CRR073302Leaf 311.616
CRR073303Juvenile bud 113.386
CRR073304Juvenile bud 28.589
CRR073305Juvenile bud 316.520
CRR073306Third green 15.841
CRR073307Third green 24.127
CRR073308Third green 37.588
CRR073309Second white 15.615
CRR073310Second white 28.394
CRR073311Second white 38.508
CRR073312Silver flowering 15.483
CRR073313Silver flowering 26.346
CRR073314Silver flowering 35.450
CRR073315Gold flowering 14.458
CRR073316Gold flowering 29.292
CRR073317Gold flowering 32.426
CRR073318Tawny withering 117.272
CRR073319Tawny withering 218.005
CRR073320Tawny withering 316.044