Gene detail

Detail information of GWHGAAZE016739

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099649.1	1.2089E-115	PREDICTED: lysine-specific demethylase JMJ25-like [Sesamum indicum]
Swissprot	tr\|Q9SSE9\|JMJ25_ARATH	5E-39	Lysine-specific demethylase JMJ25
trEMBL	tr\|A0A059AW35\|A0A059AW35_EUCGR	7E-113	Uncharacterized protein {ECO:0000313\|EMBL:KCW57655.1}
TAIR10	AT1G11950.1	1E-56	Transcription factor jumonji (jmjC) domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	81797694	81802564	+
GWHAAZE00000004	mRNA	81797694	81802564	+
GWHAAZE00000004	exon	81797694	81797735	+
GWHAAZE00000004	exon	81798481	81798653	+
GWHAAZE00000004	exon	81799219	81799318	+
GWHAAZE00000004	exon	81799414	81799549	+
GWHAAZE00000004	exon	81801724	81801787	+
GWHAAZE00000004	exon	81801877	81802564	+
GWHAAZE00000004	CDS	81797694	81797735	+
GWHAAZE00000004	CDS	81798481	81798653	+
GWHAAZE00000004	CDS	81799219	81799318	+
GWHAAZE00000004	CDS	81799414	81799549	+
GWHAAZE00000004	CDS	81801724	81801787	+
GWHAAZE00000004	CDS	81801877	81802564	+

Transcript Sequence
>GWHTAAZE016759 ATGGCCAAGGGTGAATGGAAGAGCAGCAGCAAGTATGTTCCTGGGAATGGAACCGAGTCAAATGCATGTCATCAGTGCAAGGCGAGTAAAAAAGGACACGTCGTTAAGTGCAACAGATGTGAGAGGAAGCGATATTGTGTTCCATGCATGACTAGATGGTATCAACATTCTAATATCCACTTTATAATTTCCCTTTTTCATTCCATTTTGACAGTGTACCCTAAGATGTCAGAGGAGGATTTTGCCAAAGCTTGCCCTGTTTGTTGCAATAATTGCAATTGCACAGTATGCTTGCGTAAGGAAGTACCACATCAAGGGCGGAGGAGTTTTTATTTGGAGTCCAGTGAGGAAGCCGAGTACTCAAAATATGTCTTACAAGCACTTCTCCCATTTATGAAACAATTCAATGAGGAGCAAATAATGGAGAAGGAGATGGAGGCTAAGATTCAAGGGATATCATTATCAGATATAAAACTGCAAGGCGGAAGGTTATCATTATCAAAGCAAATTTATTGCAACAATTGTAAAACTTCTGTTGTCGACTTGCACAGAAGCTGTCCTCAATGTTCTTATGACCTTTGCCTTATTTGCTGCCGAGAAATACGTGAAGGTCACCTACAAGGAGGTGAGCAGGAAGTTATTAATTCTGAGTACAAGTGCAAGACTTCTAAGCAATCAAGAAAATGGGATGTGCTGGAAAATGCCATAATTGTTTGCCCCCATGAAGCCATGGGTGGCTGCGGTCAGGGGATTTTAGAATTGAAGCATATATTTCCCGAATATTTCGTTTCCAAGTTGTTAGTGAAAGTGGAAGCTATAGCCAAAGCATACAAACTTGAGGACAGGCATGAAACTCCTGTACAAATTGACATTAGCAAAGAAAAATTACGCAAAGCCGCTTCTCGAGAAGATTCTTGTGACAATTATTTGTACTGTCCATTCGCTGCTGAAATTCAACCTGAGAATTTGAAGCATTTTCAGTGCCATTGGTTCAAGGGTGAGCCGGTGATCGTCAGTAATGTACTAGAGACAACATATGGTTTGAGCTGGGAACCAATGGTTATATGGCGTGTGCTCCGTCAGATATCAAACACTAACAATTCCAAACCAAATGATTTGAACATCATTAATTGTTCGTATTGGCGTAAGGTCAGTTTAGTTTTCTTCCTTTGCACTCATTATAGAAATTTAGGATACTTGTAA

Network for GWHGAAZE016739

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15601	KDM3	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.159
	SRR3591706	second leaf	0.411
	SRR3591707	mature leaf	0.202
	SRR3591708	Shoot apex	1.679
	SRR3591709	Stem	2.649
	SRR3591710	White floral bud	1.488
	SRR3591711	White flower	2.203
	SRR3591712	Green floral bud	1.264
	SRR3591713	Yellow flower	0.545
SRP173429	SRR8316895	Juvenile bud stage	4.804
	SRR8316896	Juvenile bud stage	3.467
	SRR8316897	Juvenile bud stage	0.574
	SRR8316894	Third green stage	1.555
	SRR8316900	Third green stage	4.219
	SRR8316901	Third green stage	3.665
	SRR8316898	Complete white stage	0.563
	SRR8316899	Complete white stage	3.984
	SRR8316903	Complete white stage	2.115
	SRR8316902	Silver flowering stage	0.482
	SRR8316904	Silver flowering stage	1.216
	SRR8316905	Silver flowering stage	0.361
	SRR8316906	Gold flowering stage	1.164
	SRR8316907	Gold flowering stage	1.603
	SRR8316908	Gold flowering stage	0.626
SRP132670	SRR6706286	Control	5.548
	SRR6706287	Light intensity 50%	6.818
	SRR6706288	Light intensity 20%	5.936
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.762
	CNS0095593	Slightly white alabastrum(diploid) 2	1.223
	CNS0095594	Slightly white alabastrum(diploid) 3	1.682
	CNS0095595	Whole white alabastrum(diploid) 2	1.715
	CNS0095596	Whole white alabastrum(diploid) 3	1.070
	CNS0095597	Whole white alabastrum(diploid) 4	1.461
	CNS0095598	Silvery flower (diploied) 1	4.781
	CNS0095599	Silvery flower (diploied) 2	1.701
	CNS0095600	Silvery flower (diploied) 3	2.859
	CNS0095601	Golden flower (diploid) 1	1.735
	CNS0095602	Golden flower (diploid) 2	2.919
	CNS0095603	Golden flower (diploid) 3	4.163
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.883
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.470
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.904
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.770
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.539
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.506
	CNS0095610	Silvery flower (tetraploid) 1	0.434
	CNS0095611	Silvery flower (tetraploid) 2	0.942
	CNS0095612	Silvery flower (tetraploid) 3	0.411
	CNS0095613	Golden flower (tetraploid) 1	0.162
	CNS0095614	Golden flower (tetraploid) 2	0.433
	CNS0095615	Golden flower (tetraploid) 3	0.221
CRA001975	CRR073297	Stem 1	4.932
	CRR073298	Stem 2	3.796
	CRR073299	Stem 3	3.076
	CRR073300	Leaf 1	4.375
	CRR073301	Leaf 2	3.043
	CRR073302	Leaf 3	3.433
	CRR073303	Juvenile bud 1	1.954
	CRR073304	Juvenile bud 2	1.482
	CRR073305	Juvenile bud 3	2.830
	CRR073306	Third green 1	1.054
	CRR073307	Third green 2	0.254
	CRR073308	Third green 3	0.790
	CRR073309	Second white 1	0.108
	CRR073310	Second white 2	0.338
	CRR073311	Second white 3	0.230
	CRR073312	Silver flowering 1	0.196
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.680
	CRR073315	Gold flowering 1	0.961
	CRR073316	Gold flowering 2	1.674
	CRR073317	Gold flowering 3	0.035
	CRR073318	Tawny withering 1	1.406
	CRR073319	Tawny withering 2	0.833
	CRR073320	Tawny withering 3	1.417