Gene detail

Detail information of GWHGAAZE016718

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010028889.1	PREDICTED: histone deacetylase 19 isoform X1 [Eucalyptus grandis]
Swissprot	tr\|O22446\|HDA19_ARATH	Histone deacetylase 19
trEMBL	tr\|A0A059APE9\|A0A059APE9_EUCGR	Histone deacetylase {ECO:0000256\|PIRNR:PIRNR037913}
TAIR10	AT4G38130.1	histone deacetylase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	81464261	81467019	+
GWHAAZE00000004	mRNA	81464261	81467019	+
GWHAAZE00000004	exon	81464261	81464788	+
GWHAAZE00000004	exon	81465594	81466034	+
GWHAAZE00000004	exon	81466771	81467019	+
GWHAAZE00000004	CDS	81464261	81464788	+
GWHAAZE00000004	CDS	81465594	81466034	+
GWHAAZE00000004	CDS	81466771	81467019	+

Transcript Sequence
>GWHTAAZE016738 ATGGAAACTGGAGGAAATTCCCTGCCATCTGGGCCCGATGGGGTGAAGCGAAAAGTGTTCTACTTCTACGACCCAGAGGTTGGAAATTATTATTATGGACAAGGACACCCTATGAAGCCACACAGGATTCGCATGACACATGCCCTCCTAGCCCACTATGGGTTACTCCAACATATGCATGTTGTAAAGCCAGTTCCTGCTAGAGATAAGGACCTGCAAAGGTTTCATGCTGACGATTATGTTGGGTTTCTAAGGGGCATCACCCCCGAAACACAACAAGATCAGCTGAGGCAGCTAAAGAGGTTTAACGTCGGTGAAGACTGCCCTGTCTTTGATGGACTCTACTCCTTCTGTCAAACTTATGCTGGAGGTTCGGTTGGTGGGGCAGTGAAGTTAAACCATGGATCTTGTGACATTGCGATAAATTGGGCTGGTGGGCTGCATCATGCAAAGAAATGTGAGGCTTCTGGTTTTTGCTATGTGAATGATATTGTGCTGGCAATTCTTGAACTTCTTAAAGTGCACGAGCGTGTTTTGTACGTTGATATTGATATTCATCATGGTGATGGTGTCGAGGAGGCTTTTTATACTACCGATAGGGTCATGACTGTTTCATTTCACAAATTTGGAGATTATTTCCCTGGTACAGGGGATATACGAGATATTGGGCATGCTAAAGGAAAATATTACTCTCTTAATGTTCCCCTAGATGATGGAATTGATGATGAAAGCTACCAGTCATTGTTTAAGCCAATAATGGGCAAAGTCATGGATGTTTTCAGGCCTGGTGCTGTGGTCTTACAGTGTGGCGCGGACTCTTTGTCTGGAGATAGGTTGGGATGCTTTAATCTCTCAATTAAAGGTCACGCTGAGTGTGTGAAATATATGCGATCTTTTAATGTGCCAATACTATTGCTGGGTGGAGGTGGCTACACTATACGCAATGTTGCTCGTTGCTGGTGCTATGAGACAGGAGTGGCACTTGGGGCAGAACTTGATGATAAGATGCCACAACACGAGTATTATGAGTATTTTGGTCCAGACTATACTCTTCATGTTGCTCCAAGTAATATGGAAAACAAGAACTCTCGTCAACAATTGGATGAAATAAGATCAGGACTTCTTCAAAATCTTTCACAACTTCAGCATGCACCAAGTGTGCAGTTCCAGGAGAGACCACCTGATACTGAATTTGCTGAGGTTTGTTTCTGTATCTAG

Network for GWHGAAZE016718

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00850.20	Hist_deacetyl	36	324	1.50E-85

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06067	HDAC1_2	Notch signaling pathway	map04330
		Cell cycle	map04110
		Thyroid hormone signaling pathway	map04919
		Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0016575	biological_process	histone deacetylation
GO:0004407	molecular_function	histone deacetylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	83.485
	SRR3591706	second leaf	35.959
	SRR3591707	mature leaf	42.283
	SRR3591708	Shoot apex	77.889
	SRR3591709	Stem	67.967
	SRR3591710	White floral bud	46.870
	SRR3591711	White flower	58.063
	SRR3591712	Green floral bud	59.074
	SRR3591713	Yellow flower	47.245
SRP173429	SRR8316895	Juvenile bud stage	50.281
	SRR8316896	Juvenile bud stage	73.358
	SRR8316897	Juvenile bud stage	31.031
	SRR8316894	Third green stage	30.069
	SRR8316900	Third green stage	80.427
	SRR8316901	Third green stage	72.842
	SRR8316898	Complete white stage	29.608
	SRR8316899	Complete white stage	136.267
	SRR8316903	Complete white stage	41.021
	SRR8316902	Silver flowering stage	24.742
	SRR8316904	Silver flowering stage	32.844
	SRR8316905	Silver flowering stage	16.282
	SRR8316906	Gold flowering stage	66.130
	SRR8316907	Gold flowering stage	64.588
	SRR8316908	Gold flowering stage	71.132
SRP132670	SRR6706286	Control	71.945
	SRR6706287	Light intensity 50%	74.391
	SRR6706288	Light intensity 20%	79.926
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	41.237
	CNS0095593	Slightly white alabastrum(diploid) 2	46.661
	CNS0095594	Slightly white alabastrum(diploid) 3	41.378
	CNS0095595	Whole white alabastrum(diploid) 2	42.209
	CNS0095596	Whole white alabastrum(diploid) 3	41.109
	CNS0095597	Whole white alabastrum(diploid) 4	35.112
	CNS0095598	Silvery flower (diploied) 1	54.944
	CNS0095599	Silvery flower (diploied) 2	49.195
	CNS0095600	Silvery flower (diploied) 3	61.227
	CNS0095601	Golden flower (diploid) 1	45.310
	CNS0095602	Golden flower (diploid) 2	68.571
	CNS0095603	Golden flower (diploid) 3	60.950
	CNS0095604	Slightly white alabastrum(tetraploid) 1	52.293
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.768
	CNS0095606	Slightly white alabastrum(tetraploid) 3	79.261
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.614
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.470
	CNS0095609	Whole white alabastrum(tetraploid) 3	58.518
	CNS0095610	Silvery flower (tetraploid) 1	54.768
	CNS0095611	Silvery flower (tetraploid) 2	53.145
	CNS0095612	Silvery flower (tetraploid) 3	35.325
	CNS0095613	Golden flower (tetraploid) 1	26.159
	CNS0095614	Golden flower (tetraploid) 2	42.044
	CNS0095615	Golden flower (tetraploid) 3	49.478
CRA001975	CRR073297	Stem 1	73.913
	CRR073298	Stem 2	68.273
	CRR073299	Stem 3	67.360
	CRR073300	Leaf 1	74.953
	CRR073301	Leaf 2	65.372
	CRR073302	Leaf 3	67.124
	CRR073303	Juvenile bud 1	59.637
	CRR073304	Juvenile bud 2	44.244
	CRR073305	Juvenile bud 3	66.756
	CRR073306	Third green 1	11.682
	CRR073307	Third green 2	12.784
	CRR073308	Third green 3	13.541
	CRR073309	Second white 1	17.173
	CRR073310	Second white 2	15.613
	CRR073311	Second white 3	16.808
	CRR073312	Silver flowering 1	13.839
	CRR073313	Silver flowering 2	14.865
	CRR073314	Silver flowering 3	12.980
	CRR073315	Gold flowering 1	47.415
	CRR073316	Gold flowering 2	71.186
	CRR073317	Gold flowering 3	57.387
	CRR073318	Tawny withering 1	70.790
	CRR073319	Tawny withering 2	61.380
	CRR073320	Tawny withering 3	67.606