Detail information of GWHGAAZE016667


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009794469.10PREDICTED: catalase isozyme 3 [Nicotiana sylvestris]
Swissprottr|O24339|CATA_SOLAP0Catalase
trEMBLtr|L0SQ48|L0SQ48_TOBAC0Catalase {ECO:0000256|RuleBase:RU000498}
TAIR10AT4G35090.10catalase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8060143380605153+
GWHAAZE00000004mRNA8060143380605153+
GWHAAZE00000004exon8060143380601538+
GWHAAZE00000004exon8060236880602645+
GWHAAZE00000004exon8060300080603776+
GWHAAZE00000004exon8060393080604019+
GWHAAZE00000004exon8060471780604784+
GWHAAZE00000004exon8060488080604973+
GWHAAZE00000004exon8060509480605153+
GWHAAZE00000004CDS8060143380601538+
GWHAAZE00000004CDS8060236880602645+
GWHAAZE00000004CDS8060300080603776+
GWHAAZE00000004CDS8060393080604019+
GWHAAZE00000004CDS8060471780604784+
GWHAAZE00000004CDS8060488080604973+
GWHAAZE00000004CDS8060509480605153+
Transcript Sequence

Network for GWHGAAZE016667

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00199.20Catalase163965.20E-173
PF06628.13Catalase-rel4214832.90E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03781katE, CAT, catB, srpA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carbon metabolismmap01200
Glyoxylate and dicarboxylate metabolismmap00630
Tryptophan metabolismmap00380
MAPK signaling pathway - plantmap04016
MAPK signaling pathway - yeastmap04011
FoxO signaling pathwaymap04068
Peroxisomemap04146
Longevity regulating pathwaymap04211
Longevity regulating pathway - wormmap04212
Longevity regulating pathway - multiple speciesmap04213

Gene Ontology

GO term OntologyName
GO:0006979biological_processresponse to oxidative stress
GO:0055114biological_processoxidation-reduction process
GO:0004096molecular_functioncatalase activity
GO:0020037molecular_functionheme binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf176.132
SRR3591706second leaf1005.207
SRR3591707mature leaf2194.539
SRR3591708Shoot apex152.129
SRR3591709Stem162.825
SRR3591710White floral bud145.462
SRR3591711White flower159.751
SRR3591712Green floral bud93.464
SRR3591713Yellow flower82.231
SRP173429 SRR8316895Juvenile bud stage 132.033
SRR8316896Juvenile bud stage 211.509
SRR8316897Juvenile bud stage 80.567
SRR8316894Third green stage 67.171
SRR8316900Third green stage 223.412
SRR8316901Third green stage 280.840
SRR8316898Complete white stage 68.870
SRR8316899Complete white stage 166.700
SRR8316903Complete white stage 134.716
SRR8316902Silver flowering stage86.955
SRR8316904Silver flowering stage107.015
SRR8316905Silver flowering stage59.141
SRR8316906Gold flowering stage 117.781
SRR8316907Gold flowering stage 116.146
SRR8316908Gold flowering stage 101.635
SRP132670SRR6706286Control336.918
SRR6706287Light intensity 50%271.614
SRR6706288Light intensity 20%264.917
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1101.738
CNS0095593Slightly white alabastrum(diploid) 264.937
CNS0095594Slightly white alabastrum(diploid) 3102.280
CNS0095595Whole white alabastrum(diploid) 284.698
CNS0095596Whole white alabastrum(diploid) 3111.463
CNS0095597Whole white alabastrum(diploid) 492.195
CNS0095598Silvery flower (diploied) 1130.346
CNS0095599Silvery flower (diploied) 2128.636
CNS0095600Silvery flower (diploied) 3238.770
CNS0095601Golden flower (diploid) 1105.883
CNS0095602Golden flower (diploid) 2202.665
CNS0095603Golden flower (diploid) 3199.297
CNS0095604Slightly white alabastrum(tetraploid) 1111.488
CNS0095605Slightly white alabastrum(tetraploid) 2105.165
CNS0095606Slightly white alabastrum(tetraploid) 3169.963
CNS0095607Whole white alabastrum(tetraploid) 161.179
CNS0095608Whole white alabastrum(tetraploid) 297.802
CNS0095609Whole white alabastrum(tetraploid) 3206.011
CNS0095610Silvery flower (tetraploid) 1440.742
CNS0095611Silvery flower (tetraploid) 2487.225
CNS0095612Silvery flower (tetraploid) 3322.680
CNS0095613Golden flower (tetraploid) 1140.963
CNS0095614Golden flower (tetraploid) 2288.000
CNS0095615Golden flower (tetraploid) 388.845
CRA001975CRR073297Stem 1135.396
CRR073298Stem 2116.494
CRR073299Stem 3148.662
CRR073300Leaf 1139.351
CRR073301Leaf 2156.238
CRR073302Leaf 3110.165
CRR073303Juvenile bud 1210.107
CRR073304Juvenile bud 2195.741
CRR073305Juvenile bud 3277.293
CRR073306Third green 1114.092
CRR073307Third green 288.252
CRR073308Third green 3108.771
CRR073309Second white 1202.583
CRR073310Second white 2181.195
CRR073311Second white 3171.693
CRR073312Silver flowering 1178.836
CRR073313Silver flowering 2226.876
CRR073314Silver flowering 3183.749
CRR073315Gold flowering 11278.391
CRR073316Gold flowering 21360.635
CRR073317Gold flowering 31213.520
CRR073318Tawny withering 1202.890
CRR073319Tawny withering 2132.477
CRR073320Tawny withering 346.320