Gene detail

Detail information of GWHGAAZE016659

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285916.1	0	PREDICTED: alcohol dehydrogenase-like 7 [Vitis vinifera]
Swissprot	tr\|Q9FH04\|ADHL7_ARATH	3E-165	Alcohol dehydrogenase-like 7
trEMBL	tr\|F6H0C5\|F6H0C5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45397.1}
TAIR10	AT5G42250.1	2E-125	Zinc-binding alcohol dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	80409782	80413281	+
GWHAAZE00000004	mRNA	80409782	80413281	+
GWHAAZE00000004	exon	80409782	80409876	+
GWHAAZE00000004	exon	80410006	80410331	+
GWHAAZE00000004	exon	80410918	80411000	+
GWHAAZE00000004	exon	80411103	80411178	+
GWHAAZE00000004	exon	80411415	80411479	+
GWHAAZE00000004	exon	80412297	80412392	+
GWHAAZE00000004	exon	80412749	80412913	+
GWHAAZE00000004	exon	80413165	80413281	+
GWHAAZE00000004	CDS	80409782	80409876	+
GWHAAZE00000004	CDS	80410006	80410331	+
GWHAAZE00000004	CDS	80410918	80411000	+
GWHAAZE00000004	CDS	80411103	80411178	+
GWHAAZE00000004	CDS	80411415	80411479	+
GWHAAZE00000004	CDS	80412297	80412392	+
GWHAAZE00000004	CDS	80412749	80412913	+
GWHAAZE00000004	CDS	80413165	80413281	+

Transcript Sequence
>GWHTAAZE016679 ATGTCCTTGACTATGCCACTGTTCTATGACTCTGGTATCTTTCTATTGAATTTTCTGTATCGTATTTTTGACTTTGTTTCACAATGTTTTGTTGGGGTTGTAGAGAGCATAGGGGAGGAAGTAGATGAGGTTACTGAAGGAGACACTGTCATCCCAATATTTTTGCCAGATTGTGGAGAATGCAGAGATTGCCGATCCAAGAAGAGCAATCTATGTTCAAAACTCCCTTTCAAGGTCTCTCCTTGGATGCACAGAGATGAGACAAGCAGATTCACTGATCTTAAAGGAGAAACTTTATACCATTTCTTATACATATCAAGTTTTAGTGAGTATACGGTGGTTGATATTGCTCATTTAACAAAAGTCGATCCTGCTATTCCCCCAAATAGGGCGTGCCTCCTCAGCTGTGGAATATCAACAGGAGTGGGTGCTGCATGCCGAACCGCTGATGTGGAAGCAGGATCAACTGTTGCTATATTTGGGATGGGAGCAATTGGATTAGCAGTTGCAGAGGGAGCAAGGCTATGCGGAGCTAAAAGAATTATTGGTGTGGATGTGAACCCAGAGAAATTTATAATCGGTAAAAAATTCGGAGTCACTGATTTTATCAACTCTCATAGCTGTGGGGACAAAACAGCGAGCCAGGTAATAAACGAGATGACTGCTGGGGGTGCAGACTACTGCTTTGAATGTGTTGGCTTGGCATCCTTGGTGCATGAAGCCTATGCTTGCTGCCGAAAGGGATGGGGAAAGACAGTGGTGGTTGGAGTGGACAAGCCAGGGTCACAATTGAACTTCAGTTCTTATGAGGTCCTTCATAGTGGGAAAATCATTATGGGGTCCCTATTTGGAGGTCTCAAACCTAAATCTGATATTCCCATCCTCGTGAAACGATATATGGACAAGGAACTGCAACTGGAAGAATTTGTTACACACGAGGTGAGTTTTAATGATATAAACAAGGCTTTCGATTTACTTATAGACGGAAAGAGCCTCCGATGCGTGATTTGGATGGACAAATAA

Network for GWHGAAZE016659

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	30	122	1.50E-10
PF00107.27	ADH_zinc_N	164	288	2.20E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00121	frmA, ADH5, adhC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Degradation of aromatic compounds	map01220
		Glycolysis / Gluconeogenesis	map00010
		Methane metabolism	map00680
		Fatty acid degradation	map00071
		Tyrosine metabolism	map00350
		Retinol metabolism	map00830
		Chloroalkane and chloroalkene degradation	map00625
		Naphthalene degradation	map00626
		Metabolism of xenobiotics by cytochrome P450	map00980
		Drug metabolism - cytochrome P450	map00982

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.131
	SRR3591706	second leaf	33.123
	SRR3591707	mature leaf	16.405
	SRR3591708	Shoot apex	52.556
	SRR3591709	Stem	9.409
	SRR3591710	White floral bud	14.331
	SRR3591711	White flower	16.155
	SRR3591712	Green floral bud	14.349
	SRR3591713	Yellow flower	4.278
SRP173429	SRR8316895	Juvenile bud stage	29.792
	SRR8316896	Juvenile bud stage	28.453
	SRR8316897	Juvenile bud stage	14.486
	SRR8316894	Third green stage	6.829
	SRR8316900	Third green stage	11.829
	SRR8316901	Third green stage	12.324
	SRR8316898	Complete white stage	1.651
	SRR8316899	Complete white stage	18.505
	SRR8316903	Complete white stage	5.066
	SRR8316902	Silver flowering stage	1.829
	SRR8316904	Silver flowering stage	1.608
	SRR8316905	Silver flowering stage	1.410
	SRR8316906	Gold flowering stage	5.423
	SRR8316907	Gold flowering stage	3.701
	SRR8316908	Gold flowering stage	4.265
SRP132670	SRR6706286	Control	20.952
	SRR6706287	Light intensity 50%	18.432
	SRR6706288	Light intensity 20%	17.197
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.500
	CNS0095593	Slightly white alabastrum(diploid) 2	19.128
	CNS0095594	Slightly white alabastrum(diploid) 3	23.588
	CNS0095595	Whole white alabastrum(diploid) 2	14.003
	CNS0095596	Whole white alabastrum(diploid) 3	8.982
	CNS0095597	Whole white alabastrum(diploid) 4	10.238
	CNS0095598	Silvery flower (diploied) 1	30.253
	CNS0095599	Silvery flower (diploied) 2	29.239
	CNS0095600	Silvery flower (diploied) 3	6.098
	CNS0095601	Golden flower (diploid) 1	31.894
	CNS0095602	Golden flower (diploid) 2	12.416
	CNS0095603	Golden flower (diploid) 3	11.618
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.646
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.256
	CNS0095606	Slightly white alabastrum(tetraploid) 3	51.235
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.665
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.673
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.426
	CNS0095610	Silvery flower (tetraploid) 1	3.358
	CNS0095611	Silvery flower (tetraploid) 2	8.357
	CNS0095612	Silvery flower (tetraploid) 3	4.675
	CNS0095613	Golden flower (tetraploid) 1	1.569
	CNS0095614	Golden flower (tetraploid) 2	1.251
	CNS0095615	Golden flower (tetraploid) 3	0.494
CRA001975	CRR073297	Stem 1	41.728
	CRR073298	Stem 2	33.795
	CRR073299	Stem 3	40.573
	CRR073300	Leaf 1	12.389
	CRR073301	Leaf 2	13.073
	CRR073302	Leaf 3	9.650
	CRR073303	Juvenile bud 1	4.062
	CRR073304	Juvenile bud 2	5.907
	CRR073305	Juvenile bud 3	5.302
	CRR073306	Third green 1	1.461
	CRR073307	Third green 2	0.919
	CRR073308	Third green 3	0.937
	CRR073309	Second white 1	0.421
	CRR073310	Second white 2	0.528
	CRR073311	Second white 3	0.366
	CRR073312	Silver flowering 1	0.651
	CRR073313	Silver flowering 2	1.032
	CRR073314	Silver flowering 3	0.289
	CRR073315	Gold flowering 1	5.580
	CRR073316	Gold flowering 2	5.383
	CRR073317	Gold flowering 3	6.969
	CRR073318	Tawny withering 1	10.068
	CRR073319	Tawny withering 2	12.820
	CRR073320	Tawny withering 3	7.691