Gene detail

Detail information of GWHGAAZE016622

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279563.1	0	PREDICTED: receptor protein kinase CLAVATA1 [Vitis vinifera]
Swissprot	tr\|Q9SYQ8\|CLV1_ARATH	9E-178	Receptor protein kinase CLAVATA1 (Precursor)
trEMBL	tr\|F6H1M3\|F6H1M3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46051.1}
TAIR10	AT1G75820.1	2E-148	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	79861334	79863084	-
GWHAAZE00000004	mRNA	79861334	79863084	-
GWHAAZE00000004	exon	79862487	79863084	-
GWHAAZE00000004	exon	79861448	79861743	-
GWHAAZE00000004	exon	79861334	79861366	-
GWHAAZE00000004	CDS	79862487	79863084	-
GWHAAZE00000004	CDS	79861448	79861743	-
GWHAAZE00000004	CDS	79861334	79861366	-

Transcript Sequence
>GWHTAAZE016642 ATGAAGAGGAAGAAGATTCAGAAATCAAAAGCATGGAAGCTCACTACATTTCAAAGGCTTGATTTCAAAGCTGAGGATGTGTTAGAGAGCTTGAAAGAGGAGAACATAATAGGCAAAGGCGGGGCTGGGATTGTTTACCGAGGGTCCATGCCTAACAGTGTGGATGTGGCGATCAAACGGCTGATAAATGGCCGGAACGATCATGGATTCTCGGCCGAGATTCAAACTCTGGGAAGAATCAGGCACCGGAATATTGTGAGATTGTTGGGACACGTGTCAAACAAGGACACAAACTTGTTGTTGTACGAGTACATGGCAAATGGTAGCTTAGGGGAAATACTGCATGGGCCGAAAGGGGCCAGGTTAAAATGGGAAATGAGGTATAGGATTGCTGTGGAGGCGGCAAAGGGGCTCTGTTATCTTCACCATGATTGTTCGCCACTCATTGTTCATAGGGATGTGAAATCGAACAATATATTGCTTGATTCGTATTATGAGGCTCATGTGGCTGATTTTGGGCTCGCTAAGTTCTTGCAAGGGGCTGGTTCGTCAGAATGCATGTCCTCCATTGCTGGCTCTTATGGTTACATTGCTCCAGAATATGCCTACACACTGAAAGTTGATGAAAAAAGTGACGTGTACAGTTTCGGAGTGGTGCTTCTAGAACTGATTGCAGGACGAAAGCCAGTGGGCGAGTTTGGGGACGGAGTGGACATAGTGAGGTGGGTCAGGAAAACAATATCAGAGCTCTCTCAGCCGTCTGATGCAGCTTCTGTACTCGCGGTTCTGGACTCTCGGATCAGTGACTACCCGTTGACGAGTGTCATTAATCTGTTCAAGATAGCGATGATGTGCGTGGAGGATGAGAGCACAGCTAGGCCAACCATGAGGGAAGTTGGTCACTTTCGTGTCTATAATATGTTATGA

Network for GWHGAAZE016622

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	32	299	3.50E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.297
	SRR3591706	second leaf	4.322
	SRR3591707	mature leaf	0.554
	SRR3591708	Shoot apex	9.970
	SRR3591709	Stem	0.613
	SRR3591710	White floral bud	0.509
	SRR3591711	White flower	0.400
	SRR3591712	Green floral bud	2.327
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.485
	SRR8316896	Juvenile bud stage	2.481
	SRR8316897	Juvenile bud stage	0.935
	SRR8316894	Third green stage	0.448
	SRR8316900	Third green stage	0.863
	SRR8316901	Third green stage	1.167
	SRR8316898	Complete white stage	0.046
	SRR8316899	Complete white stage	0.778
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.011
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.001
SRP132670	SRR6706286	Control	1.959
	SRR6706287	Light intensity 50%	2.047
	SRR6706288	Light intensity 20%	1.701
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.130
	CNS0095593	Slightly white alabastrum(diploid) 2	1.758
	CNS0095594	Slightly white alabastrum(diploid) 3	1.955
	CNS0095595	Whole white alabastrum(diploid) 2	2.155
	CNS0095596	Whole white alabastrum(diploid) 3	3.384
	CNS0095597	Whole white alabastrum(diploid) 4	1.443
	CNS0095598	Silvery flower (diploied) 1	1.350
	CNS0095599	Silvery flower (diploied) 2	1.705
	CNS0095600	Silvery flower (diploied) 3	0.438
	CNS0095601	Golden flower (diploid) 1	1.110
	CNS0095602	Golden flower (diploid) 2	0.718
	CNS0095603	Golden flower (diploid) 3	0.710
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.920
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.049
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.749
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.400
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.694
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.818
	CNS0095610	Silvery flower (tetraploid) 1	0.059
	CNS0095611	Silvery flower (tetraploid) 2	0.615
	CNS0095612	Silvery flower (tetraploid) 3	0.125
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.049
	CRR073298	Stem 2	2.030
	CRR073299	Stem 3	3.360
	CRR073300	Leaf 1	1.061
	CRR073301	Leaf 2	1.174
	CRR073302	Leaf 3	1.063
	CRR073303	Juvenile bud 1	0.752
	CRR073304	Juvenile bud 2	0.461
	CRR073305	Juvenile bud 3	0.763
	CRR073306	Third green 1	0.083
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.020
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.004
	CRR073315	Gold flowering 1	0.089
	CRR073316	Gold flowering 2	0.757
	CRR073317	Gold flowering 3	0.146
	CRR073318	Tawny withering 1	1.534
	CRR073319	Tawny withering 2	0.342
	CRR073320	Tawny withering 3	1.823