Gene detail

Detail information of GWHGAAZE016578

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP07449.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q94A40\|COPA1_ARATH	Coatomer subunit alpha-1
trEMBL	tr\|A0A068UGV7\|A0A068UGV7_COFCA	Coatomer subunit alpha {ECO:0000256\|PIRNR:PIRNR003354}
TAIR10	AT1G62020.1	Coatomer, alpha subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	79061855	79069387	-
GWHAAZE00000004	mRNA	79061855	79069387	-
GWHAAZE00000004	exon	79061855	79062730	-
GWHAAZE00000004	exon	79062813	79064806	-
GWHAAZE00000004	exon	79066019	79066513	-
GWHAAZE00000004	exon	79069180	79069387	-
GWHAAZE00000004	CDS	79069180	79069387	-
GWHAAZE00000004	CDS	79066019	79066513	-
GWHAAZE00000004	CDS	79062813	79064806	-
GWHAAZE00000004	CDS	79061855	79062730	-

Transcript Sequence
>GWHTAAZE016598 ATGTTGACGAAGTTTGAAACGAAGAGCAACAGAGTGAAGGGGCTGAGTTTCCACAGCAAGCGGCCATGGATCTTAGCCAGTCTCCACAGTGGTGTGATCCAGCTTTGGGATTTTAGGATGGGGACCCTCATTGATCGTTTCGACGAGCACGATGGCCCTGTTCGTGGTGTTCATTTCCACAATTCTCAGCCCCTTTTCGTCTCTGGAGGAGATGATTACAAGATCAAGGTTTGGAACTACAAGTTGCATAGGTGTCTGTTTACTCTTCTTGGACATCTCGATTACATCCGTACAGTCCAATTTCATCATGAGTACCCCTGGATTGTTAGTGCGAGTGATGATCAGACCATTAGGATATGGAATTGGCAATCTCGTACCTGTATTTCTGTCTTGACTGGGCACAACCATTATGTGATGTGCGCCTTGTTCCACCCGAAAGAGGATCTTGTTGTATCAGCCTCCCTGGATCAAACTGTCCGTGTTTGGGATATTGGTGCCCTCAGGAAGAAAACGGTTTCCCCTGCTGATGACATCCTTCGGTTGAGTCAAATGAACACTGATTTCTTTGGAGGGGTTGATGCTGTTGTTAAGTATGTCTTGGAGGGTCATGATCGAGGAGTCAACTGGGCTTCATTCCATCCAACACTCCCGCTGATTGTCTCTGGAGCTGATGATCGCCAAGTCAAAATCTGGCGAATGAATGATACGAAGGCTTGGGAAGTGGACACTTTGAGAGGGCACATGAACAACGTCTCATGCGTTCTTTTCCATGCAAAACAAGAAATTATCGTTTCGAATTCAGAAGACAAAAGCATTCGTGTGTGGGACGCTACAAAGAGGACCGGCCTTCAGACTTTTCGCAGGGAACATGACCGATTCTGGATTCTCGCTTGTCATCCTGAGATGAACCTTCTAGCTGCTGGGCACGATAGTGGTATGATAGTTTTCAAGTTAGAGCGAGAACGCCCAGCTTTTTCCGTGAGTGGTGATTCTCTCTACTATGTGAAAGACCGTTTTCTCCGTTTCTTTGAGTATTCAACTCAGAAAGACGCTCAAGTAATACCGATCCGTAGGCCCGGTTCTACCAGCTTGAATCAAGGTCCTAGAACTCTTTCTTATAGCCCTACCGAAAATGCTGTTTTGATTTGTTCAGACACGGACGGGGGATCTTATGAGCTCTATGTTATACCTAAAGACAGCCTTGTTAGAGGCGAGACGGTTCAAGATTCAAAAAGAGGCATTGGGGGATCGGCAGTTTTTGTAGCCCGAAATAGATTTGCTGTGCTTGAGAAGAGCAGCAACCAAGTGTTGGTCAAGAACCTTAAAAACGAGATTGTCAAGAAGAGCCCTCTTCCTGTTGCTACTGATGCTATATTCTATGCTGGTACAGGTAACTTGCTGTGTAGGGCAGAAGACAGAGTTGTCATTTTTGACCTCCAACAGCGGTTTGTTATTGGAGATCTTCAAACTTCTTTCGTTAGGTACGTTGTTTGGTCAAATGATATGGAGAGTGTTGCTTTGCTGAGTAAACACTCGATAATCATAGCTGACAAGAAACTCATTCATCGCTGTACTCTACATGAGACTATTCGTGTTAAGAGTGGAGCTTGGGATGACAATGGTGTCTTCATATACACGACTCTTACCCACATCAAATACTGCCTTCCTAATGGGGACAGTGGTATTGTAAGGACCCTTGACGTCCCAGTATACATCACAAAAATATTTGGGAACACAATCTTTTGCTTGGACCGAGATGGGAAAAACCGACCTGTTATTATCGATTCAACTGAATATGTTTTCAAGCTTTCACTGTTGAGGAAGAGATATGACCAGGTTATGAGCATGATTCGAAACTCGGAGCTCTGTGGGCAAGCGATGATTGCATATCTCCAGCAAAAAGGTTTTCCTGAAGTTGCCCTCCATTTTGTCAAAGACGAGCGGACCCGTTTCAACTTGGCACTTGAAAGTGGGAATATCCAGATTGCCGTTGCATCTGCTAAAGAGATAGACGAGAAAGATCACTGGTATAAGTTAGGGGTGGAAGCCCTTCGTCAGGGTAATTCTGGTATTGTTGAATATGCTTACCAGAGAACAAAGAACTTCGAGAGACTATCTTTCCTTTATCTGATAACCGGTAATTTGGATAAGCTGTCCAAAATGATGAAAATTGCTGAGGTTAAGAATGATGTTATGGGTCAGTTTCATAATGCATTGTACCTCGGTGATATAAAGGAGCGGATTAAGATTTTGGAGAATGCTGGCCATTTGCCTCTTGCGTACATTACAGCTACGGTCCATGGGCTTAATGATATTGTAGAACGACTTGCTACTGAATTGGGAGATAATGTACCTACTGTGCCTAAAGGCAGGTCAGCTTCTCTTTTGATGCCCCCGAGTCCCATAATGTGTGGTGGTGATTGGCCCTTGTTGATGGTTACTAAAGGGATCTTTGAGGGGGGTCTTGATAATGTGGGCAGGGGTGCACCGGATGAGTATGAAGATGCGGCTGATGCTGACTGGGGTGAGGATTTGGAGATTGTTGATGTGGAGAACATGCAGAATGGAGATATTGCTTTGGTGCTTGATGATGAGGAAGTGCACGAAGAGAACGAAGAGGGAGGTTGGGATCTTGAGGATCTTGAACTTCCTCCCGATATGGACACACCAAAGACGTCAGCTAATGCTCGATCGTCGCTGGAAACTGACACGGCCATGCGTCTGCTAAGCCGCCAACTTGGCATAAAGAACTTCACTCTGTTGAAACCGTTGTTCATTGATCTTCACACTGGGAGCCATACTTACGTAAGGGCCTTCTCCTCAGCTCCGGTGATCACGGTCGCGATTGAGCGGGGGTGGACCGAGTCGGCTAGCCCAAACGTGCGGGGCCCACCTGCACTCGTGTTTAACTTCTCCCAATTGGAAGAAAAGCTCAAGGCCGGTTATAAAGCTACCACCGCCGGGAAGTTCGGTGAAGCCTTGCGCCTTTTTTCGAGTATTCTCCACACTATTCCCTTAATTGTGGTCGAGTCGAGGAGAGAGGTGGATGAAGTGAAGGAACTTATTATCATTGTAAAGGAATATGTTCTTGGTTTACAAATGGTGGTTAAGAGTAAAGAGATGGAGGGAAAGAACGCTATTCGTCAGCAAGAACTTGCGGCTTATTTCACCCATTGTAACCTACAACAACCTCACTTGAGGCTCGCCCTCTTGAATGCGATGACTGTTTGCTTCAAGGCAGGGAACTTAATCACAGCAGCCAATTTTGCCAGGCGGCTCTTGGAGATGAATCCAACTGTTGAAACCCAAGCAAGGAAGGCCCGCCAAGTGCTGCAGGCGGCTGAGAGGAACATGAGGGATGTAAGTCAGCTTAATTATGACTTTAGGAACCCGTTTGTACCCTGTGGAGCCACGTTTGTACCTATATACCGTGGGCAAAAGGATGTTTCGTGCCCGTATTGCAGTTCGCATTTCGTGGTGTCGCATGAAGGGCAGATTTGTACCGTGTGTGAGCTTGCGGTGGTGGGATCTGACGCATCTGGTTTAATGTGTTCTCCTTCTCAGGTAAGATGA

Network for GWHGAAZE016578

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	45	79	7.80E-05
PF00400.33	WD40	84	121	4.80E-08
PF00400.33	WD40	126	163	6.60E-07
PF00400.33	WD40	198	231	0.00036
PF00400.33	WD40	241	276	3.20E-05
PF04053.15	Coatomer_WDAD	346	768	6.40E-131
PF06957.12	COPI_C	815	898	1.60E-11
PF06957.12	COPI_C	903	1190	3.30E-126

Protein Sequence

>GWHPAAZE016588
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDFRMGTLIDRFDEHDGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCALFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILRLSQMNTDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWEVDTLRGHMNNVSCVLFHAKQEIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILACHPEMNLLAAGHDSGMIVFKLERERPAFSVSGDSLYYVKDRFLRFFEYSTQKDAQVIPIRRPGSTSLNQGPRTLSYSPTENAVLICSDTDGGSYELYVIPKDSLVRGETVQDSKRGIGGSAVFVARNRFAVLEKSSNQVLVKNLKNEIVKKSPLPVATDAIFYAGTGNLLCRAEDRVVIFDLQQRFVIGDLQTSFVRYVVWSNDMESVALLSKHSIIIADKKLIHRCTLHETIRVKSGAWDDNGVFIYTTLTHIKYCLPNGDSGIVRTLDVPVYITKIFGNTIFCLDRDGKNRPVIIDSTEYVFKLSLLRKRYDQVMSMIRNSELCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYKLGVEALRQGNSGIVEYAYQRTKNFERLSFLYLITGNLDKLSKMMKIAEVKNDVMGQFHNALYLGDIKERIKILENAGHLPLAYITATVHGLNDIVERLATELGDNVPTVPKGRSASLLMPPSPIMCGGDWPLLMVTKGIFEGGLDNVGRGAPDEYEDAADADWGEDLEIVDVENMQNGDIALVLDDEEVHEENEEGGWDLEDLELPPDMDTPKTSANARSSLETDTAMRLLSRQLGIKNFTLLKPLFIDLHTGSHTYVRAFSSAPVITVAIERGWTESASPNVRGPPALVFNFSQLEEKLKAGYKATTAGKFGEALRLFSSILHTIPLIVVESRREVDEVKELIIIVKEYVLGLQMVVKSKEMEGKNAIRQQELAAYFTHCNLQQPHLRLALLNAMTVCFKAGNLITAANFARRLLEMNPTVETQARKARQVLQAAERNMRDVSQLNYDFRNPFVPCGATFVPIYRGQKDVSCPYCSSHFVVSHEGQICTVCELAVVGSDASGLMCSPSQVR

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0030126	cellular_component	COPI vesicle coat
GO:0030117	cellular_component	membrane coat
GO:0005515	molecular_function	protein binding
GO:0005198	molecular_function	structural molecule activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.229
	SRR3591706	second leaf	23.987
	SRR3591707	mature leaf	10.275
	SRR3591708	Shoot apex	29.513
	SRR3591709	Stem	25.948
	SRR3591710	White floral bud	31.877
	SRR3591711	White flower	23.924
	SRR3591712	Green floral bud	54.657
	SRR3591713	Yellow flower	19.069
SRP173429	SRR8316895	Juvenile bud stage	27.016
	SRR8316896	Juvenile bud stage	40.578
	SRR8316897	Juvenile bud stage	18.495
	SRR8316894	Third green stage	17.470
	SRR8316900	Third green stage	53.756
	SRR8316901	Third green stage	52.001
	SRR8316898	Complete white stage	12.710
	SRR8316899	Complete white stage	39.623
	SRR8316903	Complete white stage	24.990
	SRR8316902	Silver flowering stage	9.331
	SRR8316904	Silver flowering stage	14.629
	SRR8316905	Silver flowering stage	7.414
	SRR8316906	Gold flowering stage	23.514
	SRR8316907	Gold flowering stage	23.744
	SRR8316908	Gold flowering stage	24.984
SRP132670	SRR6706286	Control	32.222
	SRR6706287	Light intensity 50%	38.300
	SRR6706288	Light intensity 20%	41.240
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.099
	CNS0095593	Slightly white alabastrum(diploid) 2	24.884
	CNS0095594	Slightly white alabastrum(diploid) 3	25.120
	CNS0095595	Whole white alabastrum(diploid) 2	25.781
	CNS0095596	Whole white alabastrum(diploid) 3	28.527
	CNS0095597	Whole white alabastrum(diploid) 4	22.844
	CNS0095598	Silvery flower (diploied) 1	17.050
	CNS0095599	Silvery flower (diploied) 2	15.930
	CNS0095600	Silvery flower (diploied) 3	32.958
	CNS0095601	Golden flower (diploid) 1	13.413
	CNS0095602	Golden flower (diploid) 2	28.715
	CNS0095603	Golden flower (diploid) 3	27.557
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.982
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.792
	CNS0095606	Slightly white alabastrum(tetraploid) 3	60.492
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.282
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.968
	CNS0095609	Whole white alabastrum(tetraploid) 3	63.265
	CNS0095610	Silvery flower (tetraploid) 1	27.023
	CNS0095611	Silvery flower (tetraploid) 2	23.406
	CNS0095612	Silvery flower (tetraploid) 3	25.749
	CNS0095613	Golden flower (tetraploid) 1	11.730
	CNS0095614	Golden flower (tetraploid) 2	24.778
	CNS0095615	Golden flower (tetraploid) 3	12.473
CRA001975	CRR073297	Stem 1	44.383
	CRR073298	Stem 2	44.289
	CRR073299	Stem 3	44.576
	CRR073300	Leaf 1	60.211
	CRR073301	Leaf 2	56.378
	CRR073302	Leaf 3	50.196
	CRR073303	Juvenile bud 1	56.535
	CRR073304	Juvenile bud 2	57.065
	CRR073305	Juvenile bud 3	70.618
	CRR073306	Third green 1	26.717
	CRR073307	Third green 2	20.178
	CRR073308	Third green 3	25.739
	CRR073309	Second white 1	28.741
	CRR073310	Second white 2	22.647
	CRR073311	Second white 3	22.873
	CRR073312	Silver flowering 1	24.876
	CRR073313	Silver flowering 2	28.856
	CRR073314	Silver flowering 3	22.889
	CRR073315	Gold flowering 1	13.474
	CRR073316	Gold flowering 2	19.080
	CRR073317	Gold flowering 3	17.552
	CRR073318	Tawny withering 1	33.896
	CRR073319	Tawny withering 2	24.845
	CRR073320	Tawny withering 3	33.379