Gene detail

Detail information of GWHGAAZE016567

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664721.1	1.2292E-143	PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
Swissprot	tr\|P51820\|DRTS_SOYBN	7E-138	Thymidylate synthase
trEMBL	tr\|A0A067LBA7\|A0A067LBA7_JATCU	9E-144	Bifunctional dihydrofolate reductase-thymidylate synthase {ECO:0000256\|PIRNR:PIRNR000389}
TAIR10	AT2G16370.1	2E-103	thymidylate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	78923343	78925339	-
GWHAAZE00000004	mRNA	78923343	78925339	-
GWHAAZE00000004	exon	78924912	78925339	-
GWHAAZE00000004	exon	78924134	78924452	-
GWHAAZE00000004	exon	78923964	78924008	-
GWHAAZE00000004	exon	78923343	78923468	-
GWHAAZE00000004	CDS	78924912	78925339	-
GWHAAZE00000004	CDS	78924134	78924452	-
GWHAAZE00000004	CDS	78923964	78924008	-
GWHAAZE00000004	CDS	78923343	78923468	-

Transcript Sequence
>GWHTAAZE016587 ATGGGTGGGGATTCGCTCGTGAACATTTCTAATGGTGACACAGGTATACAGCCTAAATTCCCAAGGACCTACCAGGTTGTGGTGGCTGCAACTCGTGATATGGGAATTGGGAAGAACGGCAAGTTACCATGGAGACTGCCTTTGGACCTTAAGTTTTTTAAGGAGATAACGATGACTACATCTGATCCTGGGAAGAAGAATGCTGTTGTAATGGGAAGGAAAACTTGGGAAAGTATTCCCTTTCAGTATCGCCCTCTACCTGGTCGATTAAACGTCGTGCTAACTCGTTCTGGGAGTTTCGATATAGCGACCACTGAGAATGTTATTACATGTGAGAGCATTCTGTCTGCATTGCAACTGTTAGCAGAATCTCCTTATTGTTTCTCAATAGAGAAAGTCTTCATCATAGGAGGTGGCCAGGTATTAAGAGAAGCACTTAACGCTTCTGGATGTGAAGCCATCCACATGACTGAAATTGAGACAAGTATTGAGTGTGATATTTTCATCCCCCCTGTTGACATCTCTGTATTTCAGCGATGGTACTCATCTTTACCTGTAGTGGAGAACAATATCCGTTATTGTTTCGTTACTTATGTTCGTGCAAGAAAATCTGCAATAAATAGTAACAGTAGTTCAGTGTCCAATGAGTTTAAGGTTGAGGATTTTACCTTCTTACCAAGGAAGATTTTTGAGAAACACGAGAGGACTGGGACTGGTACTGGTAATCTTTCGAAATTTGGCTGCCAGATGCATTTTCACCTGCATGAATATTTTCCACGTCTTACAACAAAGAGAGTTTTTTGGCGAGGTGTTGTTGAAGAGCTTTTGTGGTTTATTGGTGGTTCAACAAATGCTAAGGAAATAGTGTCATCAAGTCCCTCGGAAATATTCTCTCTTTTCCAGCGGTGTTCTCTGTAA

Network for GWHGAAZE016567

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00186.20	DHFR_1	25	200	1.90E-36
PF00303.20	Thymidylat_synt	231	289	1.60E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13998	DHFR-TS	Metabolic pathways	map01100
		Pyrimidine metabolism	map00240
		Folate biosynthesis	map00790
		One carbon pool by folate	map00670

Gene Ontology

GO term	Ontology	Name
GO:0046654	biological_process	tetrahydrofolate biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0004146	molecular_function	dihydrofolate reductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.409
	SRR3591706	second leaf	18.622
	SRR3591707	mature leaf	18.352
	SRR3591708	Shoot apex	20.620
	SRR3591709	Stem	19.728
	SRR3591710	White floral bud	5.898
	SRR3591711	White flower	6.240
	SRR3591712	Green floral bud	18.756
	SRR3591713	Yellow flower	9.746
SRP173429	SRR8316895	Juvenile bud stage	23.577
	SRR8316896	Juvenile bud stage	33.959
	SRR8316897	Juvenile bud stage	10.779
	SRR8316894	Third green stage	14.181
	SRR8316900	Third green stage	34.028
	SRR8316901	Third green stage	28.453
	SRR8316898	Complete white stage	5.855
	SRR8316899	Complete white stage	35.307
	SRR8316903	Complete white stage	7.500
	SRR8316902	Silver flowering stage	2.731
	SRR8316904	Silver flowering stage	1.823
	SRR8316905	Silver flowering stage	1.322
	SRR8316906	Gold flowering stage	5.677
	SRR8316907	Gold flowering stage	7.090
	SRR8316908	Gold flowering stage	3.951
SRP132670	SRR6706286	Control	9.483
	SRR6706287	Light intensity 50%	10.716
	SRR6706288	Light intensity 20%	11.583
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.793
	CNS0095593	Slightly white alabastrum(diploid) 2	29.540
	CNS0095594	Slightly white alabastrum(diploid) 3	24.644
	CNS0095595	Whole white alabastrum(diploid) 2	22.750
	CNS0095596	Whole white alabastrum(diploid) 3	25.904
	CNS0095597	Whole white alabastrum(diploid) 4	26.097
	CNS0095598	Silvery flower (diploied) 1	22.653
	CNS0095599	Silvery flower (diploied) 2	23.665
	CNS0095600	Silvery flower (diploied) 3	8.389
	CNS0095601	Golden flower (diploid) 1	22.984
	CNS0095602	Golden flower (diploid) 2	11.893
	CNS0095603	Golden flower (diploid) 3	13.194
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.109
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.173
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.085
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.970
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.574
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.116
	CNS0095610	Silvery flower (tetraploid) 1	7.160
	CNS0095611	Silvery flower (tetraploid) 2	7.091
	CNS0095612	Silvery flower (tetraploid) 3	5.148
	CNS0095613	Golden flower (tetraploid) 1	4.652
	CNS0095614	Golden flower (tetraploid) 2	5.985
	CNS0095615	Golden flower (tetraploid) 3	1.880
CRA001975	CRR073297	Stem 1	20.463
	CRR073298	Stem 2	13.520
	CRR073299	Stem 3	10.956
	CRR073300	Leaf 1	12.718
	CRR073301	Leaf 2	13.225
	CRR073302	Leaf 3	12.070
	CRR073303	Juvenile bud 1	8.978
	CRR073304	Juvenile bud 2	9.957
	CRR073305	Juvenile bud 3	11.744
	CRR073306	Third green 1	0.444
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.299
	CRR073309	Second white 1	0.715
	CRR073310	Second white 2	0.822
	CRR073311	Second white 3	0.410
	CRR073312	Silver flowering 1	0.868
	CRR073313	Silver flowering 2	0.526
	CRR073314	Silver flowering 3	0.382
	CRR073315	Gold flowering 1	8.325
	CRR073316	Gold flowering 2	16.467
	CRR073317	Gold flowering 3	9.653
	CRR073318	Tawny withering 1	15.301
	CRR073319	Tawny withering 2	12.770
	CRR073320	Tawny withering 3	12.659