Gene detail

Detail information of GWHGAAZE016485

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN78410.1	1.0419E-110	hypothetical protein VITISV_023179 [Vitis vinifera]
trEMBL	tr\|A5AWQ3\|A5AWQ3_VITVI	4E-111	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN78410.1}
TAIR10	AT4G33360.1	3E-72	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	77503605	77507677	-
GWHAAZE00000004	mRNA	77503605	77507677	-
GWHAAZE00000004	exon	77507669	77507677	-
GWHAAZE00000004	exon	77506916	77507044	-
GWHAAZE00000004	exon	77506650	77506814	-
GWHAAZE00000004	exon	77505663	77505715	-
GWHAAZE00000004	exon	77505169	77505388	-
GWHAAZE00000004	exon	77504220	77504318	-
GWHAAZE00000004	exon	77503605	77503631	-
GWHAAZE00000004	CDS	77507669	77507677	-
GWHAAZE00000004	CDS	77506916	77507044	-
GWHAAZE00000004	CDS	77506650	77506814	-
GWHAAZE00000004	CDS	77505663	77505715	-
GWHAAZE00000004	CDS	77505169	77505388	-
GWHAAZE00000004	CDS	77504220	77504318	-
GWHAAZE00000004	CDS	77503605	77503631	-

Transcript Sequence
>GWHTAAZE016505 ATGAAGAAGGTTAATGTTGGAGGTTTGAAGAACATTTTGCAAGCTTACAAAGACACAAAGACAATAGAGAAGATCATTTACACATCATCGTTTTTCGCTTTGGGATCAACTGATGGATATACAGCAGATGAGAGTCAAATTCATCCTTGCAAGTTTTTCTGTACGGAGTATGAGAAATCGAAGGCTATTGCAGACAAGATTGCTTTAGAAGCTGCATCGGAGGGCGTTCCCATTGTTCCGGTTTATCCCGGAGTTATATATGGCCCTGGCAAGGTCACTGCTGGAAATGTTGTTGCAAAATTGTTTTCTCTTTTTAGTAGAGCTGGTGCGTTACCAGGTCTCCAGTGTTGTGACTATAGACGGGCACATTGCAGCTATGAACAAAGGTCGACCGGTGAAAGGTATCTTCTTACAGGCGAAAATGCATCGTTCAAGCAAGTTTTCGATATAGCTGCTGCCATAACTGAGACAAAAAAGCCTTGGTTTGGCATACCTCTACTGGTGATTGAGGTTTATGGATGGGCATCGGTTCTTTGGTCTAGAATTACAGGAAAGCTTCCTCTTATCAGCCCCCCGACGGTATATGTTCTTAGACATCAATGGGCTTACTCTTGCGAGAAGGCGAAACTAGAGCTTGGTTATAACCCTAGAAGCTTGAGAGAAGGTCTAGGAGAGACCCAGAATTACAGAGTGGTGGACTGA

Network for GWHGAAZE016485

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01073.20	3Beta_HSD	2	96	9.30E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15891	FLDH	Biosynthesis of secondary metabolites	map01110
		Terpenoid backbone biosynthesis	map00900
		Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

GO term	Ontology	Name
GO:0006694	biological_process	steroid biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0003854	molecular_function	3-beta-hydroxy-delta5-steroid dehydrogenase activity
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.483
	SRR3591706	second leaf	8.520
	SRR3591707	mature leaf	7.951
	SRR3591708	Shoot apex	15.561
	SRR3591709	Stem	10.415
	SRR3591710	White floral bud	12.359
	SRR3591711	White flower	15.793
	SRR3591712	Green floral bud	15.467
	SRR3591713	Yellow flower	5.345
SRP173429	SRR8316895	Juvenile bud stage	18.265
	SRR8316896	Juvenile bud stage	21.429
	SRR8316897	Juvenile bud stage	11.046
	SRR8316894	Third green stage	9.036
	SRR8316900	Third green stage	26.077
	SRR8316901	Third green stage	24.741
	SRR8316898	Complete white stage	7.198
	SRR8316899	Complete white stage	30.580
	SRR8316903	Complete white stage	14.793
	SRR8316902	Silver flowering stage	6.642
	SRR8316904	Silver flowering stage	10.416
	SRR8316905	Silver flowering stage	3.492
	SRR8316906	Gold flowering stage	10.471
	SRR8316907	Gold flowering stage	12.746
	SRR8316908	Gold flowering stage	13.135
SRP132670	SRR6706286	Control	19.995
	SRR6706287	Light intensity 50%	22.780
	SRR6706288	Light intensity 20%	21.994
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.325
	CNS0095593	Slightly white alabastrum(diploid) 2	12.476
	CNS0095594	Slightly white alabastrum(diploid) 3	14.486
	CNS0095595	Whole white alabastrum(diploid) 2	14.236
	CNS0095596	Whole white alabastrum(diploid) 3	10.617
	CNS0095597	Whole white alabastrum(diploid) 4	10.075
	CNS0095598	Silvery flower (diploied) 1	17.881
	CNS0095599	Silvery flower (diploied) 2	18.189
	CNS0095600	Silvery flower (diploied) 3	12.856
	CNS0095601	Golden flower (diploid) 1	17.209
	CNS0095602	Golden flower (diploid) 2	17.184
	CNS0095603	Golden flower (diploid) 3	18.756
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.987
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.881
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.149
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.599
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.737
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.661
	CNS0095610	Silvery flower (tetraploid) 1	21.877
	CNS0095611	Silvery flower (tetraploid) 2	17.125
	CNS0095612	Silvery flower (tetraploid) 3	15.730
	CNS0095613	Golden flower (tetraploid) 1	6.777
	CNS0095614	Golden flower (tetraploid) 2	16.317
	CNS0095615	Golden flower (tetraploid) 3	4.721
CRA001975	CRR073297	Stem 1	22.113
	CRR073298	Stem 2	22.299
	CRR073299	Stem 3	19.829
	CRR073300	Leaf 1	19.790
	CRR073301	Leaf 2	23.608
	CRR073302	Leaf 3	20.328
	CRR073303	Juvenile bud 1	19.272
	CRR073304	Juvenile bud 2	15.060
	CRR073305	Juvenile bud 3	19.872
	CRR073306	Third green 1	4.598
	CRR073307	Third green 2	3.506
	CRR073308	Third green 3	5.001
	CRR073309	Second white 1	2.504
	CRR073310	Second white 2	2.525
	CRR073311	Second white 3	1.910
	CRR073312	Silver flowering 1	1.381
	CRR073313	Silver flowering 2	1.233
	CRR073314	Silver flowering 3	2.141
	CRR073315	Gold flowering 1	8.873
	CRR073316	Gold flowering 2	13.321
	CRR073317	Gold flowering 3	5.023
	CRR073318	Tawny withering 1	17.804
	CRR073319	Tawny withering 2	12.038
	CRR073320	Tawny withering 3	11.694