Gene detail

Detail information of GWHGAAZE016429

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285015.1	6.2044E-122	PREDICTED: transcription factor MYB44-like [Vitis vinifera]
Swissprot	tr\|Q9FDW1\|MYB44_ARATH	2E-83	Transcription factor MYB44
trEMBL	tr\|F6GZY0\|F6GZY0_VITVI	2E-122	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45801.1}
TAIR10	AT5G67300.1	2E-63	myb domain protein r1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	76494659	76495741	-
GWHAAZE00000004	mRNA	76494659	76495741	-
GWHAAZE00000004	exon	76494659	76495741	-
GWHAAZE00000004	CDS	76494659	76495741	-

Transcript Sequence
>GWHTAAZE016449 ATGGCCACTAAACAAAAGGATTCCGATCGGATCAAAGGTCCATGGAGTCCCGAGGAAGACGAACTCTTACAAAGACTAGTCGAAAAGCACGGCCCCAGGAATTGGTCATTGATAAGCAAATCCATCTCAGGCCGCTCCGGAAAATCTTGTCGGCTCCGGTGGTGCAACCAGCTGTCACCGCAGGTGGAGCACCGTCCGTTCTCTGCTGAAGAGGACGAGAAGATTCTCCGGGCCCATGCCCGCTTCGGTAATAAGTGGGCCACTATAGCCCGCTTATTAAATGGCCGAACCGATAACGCCATAAAGAACCACTGGAACTCCACGTTGAAGCGGAAGTGCTCGGCGATGGGGGAGGATATCTGCACTGGTGACTTGAAAAGATCGGCTAGTGTCGGGCCAGGTACCAATTTGTGTGTTAATCCAGGTAGCCCAACCGGGTCGGATGTGAGTGACTCGGGTTTTTATGTTCCCTCTTCGCATGTTTACCGGCCGGTTCCTCGGGCCGGTGGGATTTCTCCTCCGGTTCAGATAGAACCGGCTTCCTCGAGTAACGAGCCTCCAACTTCTCTGACTCTGTCCTTGCCCGGATCCGATTCGGGTGAAGTTTCGGATCACAGAACCGACACTGACCCAACCAAGAATCGGACCGTTCAGGTTCAGGCTCTAACAGGCTCGGCAGGAAATGAACCGGACCGACCGCTTCAATCCCAGTTTCTACATTTTCCGGTGAAACGGAGCGATTCGGGTGAAGTATCGGATCACGGAACCGATTCTGACAGGAATCGGGTAGGGACCTTTCATGCTCTGCCGGTTCAGTCTCAGTTTGTACCATTGCCAGTGAACAGGGTTGAGGCGGCGCCGGTTCAAAGTTGCCGGAGTTTTGGGTTTGGAGCGGTGGGGGAGCCGGTGGAGAGCCAGTTTTTCAAGCCGGAATTTTTGGCAGTGATGCAAGAGATGATTAAAATAGAAGTGAGGAATTATATGTCTGGGATTGAATTCGAAAGGAATGGAATTTGTATGCAAAGTGATGCAATTATGAATGCAGTGGTGAAGCGTATTGGCATTAGCCAAATGGAGCAGTGA

Network for GWHGAAZE016429

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13921.7	Myb_DNA-bind_6	15	74	5.40E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	109.325
	SRR3591706	second leaf	44.687
	SRR3591707	mature leaf	69.665
	SRR3591708	Shoot apex	73.569
	SRR3591709	Stem	129.064
	SRR3591710	White floral bud	108.737
	SRR3591711	White flower	161.213
	SRR3591712	Green floral bud	43.221
	SRR3591713	Yellow flower	122.631
SRP173429	SRR8316895	Juvenile bud stage	117.106
	SRR8316896	Juvenile bud stage	81.866
	SRR8316897	Juvenile bud stage	89.457
	SRR8316894	Third green stage	22.938
	SRR8316900	Third green stage	48.345
	SRR8316901	Third green stage	74.730
	SRR8316898	Complete white stage	38.929
	SRR8316899	Complete white stage	206.091
	SRR8316903	Complete white stage	53.938
	SRR8316902	Silver flowering stage	40.545
	SRR8316904	Silver flowering stage	35.643
	SRR8316905	Silver flowering stage	20.957
	SRR8316906	Gold flowering stage	82.488
	SRR8316907	Gold flowering stage	108.340
	SRR8316908	Gold flowering stage	80.432
SRP132670	SRR6706286	Control	79.122
	SRR6706287	Light intensity 50%	68.526
	SRR6706288	Light intensity 20%	70.030
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	62.928
	CNS0095593	Slightly white alabastrum(diploid) 2	54.340
	CNS0095594	Slightly white alabastrum(diploid) 3	65.461
	CNS0095595	Whole white alabastrum(diploid) 2	64.936
	CNS0095596	Whole white alabastrum(diploid) 3	25.443
	CNS0095597	Whole white alabastrum(diploid) 4	45.800
	CNS0095598	Silvery flower (diploied) 1	219.063
	CNS0095599	Silvery flower (diploied) 2	224.011
	CNS0095600	Silvery flower (diploied) 3	303.534
	CNS0095601	Golden flower (diploid) 1	237.940
	CNS0095602	Golden flower (diploid) 2	326.239
	CNS0095603	Golden flower (diploid) 3	337.055
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.542
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.151
	CNS0095606	Slightly white alabastrum(tetraploid) 3	55.251
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.357
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.329
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.259
	CNS0095610	Silvery flower (tetraploid) 1	125.841
	CNS0095611	Silvery flower (tetraploid) 2	166.907
	CNS0095612	Silvery flower (tetraploid) 3	102.981
	CNS0095613	Golden flower (tetraploid) 1	89.763
	CNS0095614	Golden flower (tetraploid) 2	108.059
	CNS0095615	Golden flower (tetraploid) 3	112.375
CRA001975	CRR073297	Stem 1	48.343
	CRR073298	Stem 2	31.731
	CRR073299	Stem 3	57.165
	CRR073300	Leaf 1	20.193
	CRR073301	Leaf 2	36.136
	CRR073302	Leaf 3	33.113
	CRR073303	Juvenile bud 1	34.324
	CRR073304	Juvenile bud 2	24.431
	CRR073305	Juvenile bud 3	64.126
	CRR073306	Third green 1	6.781
	CRR073307	Third green 2	22.153
	CRR073308	Third green 3	13.266
	CRR073309	Second white 1	6.169
	CRR073310	Second white 2	7.015
	CRR073311	Second white 3	6.071
	CRR073312	Silver flowering 1	16.447
	CRR073313	Silver flowering 2	13.809
	CRR073314	Silver flowering 3	9.627
	CRR073315	Gold flowering 1	315.388
	CRR073316	Gold flowering 2	311.481
	CRR073317	Gold flowering 3	190.777
	CRR073318	Tawny withering 1	85.894
	CRR073319	Tawny withering 2	114.442
	CRR073320	Tawny withering 3	138.003