Detail information of GWHGAAZE016399


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010664514.10PREDICTED: DNA excision repair protein ERCC-8 [Vitis vinifera]
Swissprottr|O22468|MSI2_ARATH3E-11WD-40 repeat-containing protein MSI2
trEMBLtr|E0CP23|E0CP23_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI19401.3}
TAIR10AT1G27840.14E-163Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7581212175818853+
GWHAAZE00000004mRNA7581212175818853+
GWHAAZE00000004exon7581212175812273+
GWHAAZE00000004exon7581497075815230+
GWHAAZE00000004exon7581536275815521+
GWHAAZE00000004exon7581598275816160+
GWHAAZE00000004exon7581744175817690+
GWHAAZE00000004exon7581844475818598+
GWHAAZE00000004exon7581868775818853+
GWHAAZE00000004CDS7581212175812273+
GWHAAZE00000004CDS7581497075815230+
GWHAAZE00000004CDS7581536275815521+
GWHAAZE00000004CDS7581598275816160+
GWHAAZE00000004CDS7581744175817690+
GWHAAZE00000004CDS7581844475818598+
GWHAAZE00000004CDS7581868775818836+
GWHAAZE00000004three_prime_UTR7581883775818853+
Transcript Sequence

Network for GWHGAAZE016399

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD401011330.2
PF00400.33WD401842207.10E-07
PF00400.33WD403133440.023
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K10570ERCC8, CKN1, CSA Ubiquitin mediated proteolysis map04120
Nucleotide excision repairmap03420

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.032
SRR3591706second leaf10.056
SRR3591707mature leaf11.326
SRR3591708Shoot apex13.553
SRR3591709Stem14.704
SRR3591710White floral bud11.428
SRR3591711White flower14.506
SRR3591712Green floral bud11.845
SRR3591713Yellow flower13.748
SRP173429 SRR8316895Juvenile bud stage 10.680
SRR8316896Juvenile bud stage 15.093
SRR8316897Juvenile bud stage 7.383
SRR8316894Third green stage 5.308
SRR8316900Third green stage 15.674
SRR8316901Third green stage 15.137
SRR8316898Complete white stage 8.626
SRR8316899Complete white stage 24.065
SRR8316903Complete white stage 13.154
SRR8316902Silver flowering stage10.281
SRR8316904Silver flowering stage14.120
SRR8316905Silver flowering stage6.661
SRR8316906Gold flowering stage 21.724
SRR8316907Gold flowering stage 17.872
SRR8316908Gold flowering stage 20.992
SRP132670SRR6706286Control11.725
SRR6706287Light intensity 50%12.099
SRR6706288Light intensity 20%13.111
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.510
CNS0095593Slightly white alabastrum(diploid) 28.228
CNS0095594Slightly white alabastrum(diploid) 39.042
CNS0095595Whole white alabastrum(diploid) 211.704
CNS0095596Whole white alabastrum(diploid) 312.360
CNS0095597Whole white alabastrum(diploid) 412.955
CNS0095598Silvery flower (diploied) 112.321
CNS0095599Silvery flower (diploied) 29.145
CNS0095600Silvery flower (diploied) 323.852
CNS0095601Golden flower (diploid) 112.417
CNS0095602Golden flower (diploid) 222.325
CNS0095603Golden flower (diploid) 322.649
CNS0095604Slightly white alabastrum(tetraploid) 115.619
CNS0095605Slightly white alabastrum(tetraploid) 210.645
CNS0095606Slightly white alabastrum(tetraploid) 325.010
CNS0095607Whole white alabastrum(tetraploid) 114.157
CNS0095608Whole white alabastrum(tetraploid) 210.882
CNS0095609Whole white alabastrum(tetraploid) 318.838
CNS0095610Silvery flower (tetraploid) 134.310
CNS0095611Silvery flower (tetraploid) 229.021
CNS0095612Silvery flower (tetraploid) 320.894
CNS0095613Golden flower (tetraploid) 115.048
CNS0095614Golden flower (tetraploid) 222.141
CNS0095615Golden flower (tetraploid) 330.940
CRA001975CRR073297Stem 118.633
CRR073298Stem 215.864
CRR073299Stem 312.665
CRR073300Leaf 120.053
CRR073301Leaf 221.346
CRR073302Leaf 311.090
CRR073303Juvenile bud 112.847
CRR073304Juvenile bud 28.294
CRR073305Juvenile bud 311.148
CRR073306Third green 15.930
CRR073307Third green 26.971
CRR073308Third green 35.732
CRR073309Second white 16.356
CRR073310Second white 211.058
CRR073311Second white 38.670
CRR073312Silver flowering 15.871
CRR073313Silver flowering 25.246
CRR073314Silver flowering 33.314
CRR073315Gold flowering 15.454
CRR073316Gold flowering 28.802
CRR073317Gold flowering 35.722
CRR073318Tawny withering 112.830
CRR073319Tawny withering 210.483
CRR073320Tawny withering 38.778