Detail information of GWHGAAZE016372


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAIK23028.10squalene epoxidase 1 [Panax vietnamensis var. fuscidiscus]
Swissprottr|O48651|ERG1_PANGI0Squalene monooxygenase
trEMBLtr|A0A076VA95|A0A076VA95_9APIA0Squalene epoxidase 1 {ECO:0000313|EMBL:AIK23028.1}
TAIR10AT1G58440.10FAD/NAD(P)-binding oxidoreductase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7508836775091818-
GWHAAZE00000004mRNA7508836775091818-
GWHAAZE00000004exon7508836775088474-
GWHAAZE00000004exon7508875675089034-
GWHAAZE00000004exon7508930575089580-
GWHAAZE00000004exon7508971575089933-
GWHAAZE00000004exon7509009375090261-
GWHAAZE00000004exon7509035375090527-
GWHAAZE00000004exon7509064975090760-
GWHAAZE00000004exon7509150575091818-
GWHAAZE00000004five_prime_UTR7509174575091818-
GWHAAZE00000004CDS7509150575091744-
GWHAAZE00000004CDS7509064975090760-
GWHAAZE00000004CDS7509035375090527-
GWHAAZE00000004CDS7509009375090261-
GWHAAZE00000004CDS7508971575089933-
GWHAAZE00000004CDS7508930575089580-
GWHAAZE00000004CDS7508875675089034-
GWHAAZE00000004CDS7508836775088474-
Transcript Sequence

Network for GWHGAAZE016372

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0101GO:0004506 squalene monooxygenase activity GOslim:molecular_function
map00909 Sesquiterpenoid and triterpenoid biosynthesis
map00100 Steroid biosynthesis
GO:0050660 flavin adenine dinucleotide binding GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13450.7NAD_binding_864904.50E-05
PF08491.11SE2114838.50E-120
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00511SQLE, ERG1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Steroid biosynthesismap00100
Sesquiterpenoid and triterpenoid biosynthesismap00909

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016021cellular_componentintegral component of membrane
GO:0004506molecular_functionsqualene monooxygenase activity
GO:0050660molecular_functionflavin adenine dinucleotide binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf57.536
SRR3591706second leaf7.704
SRR3591707mature leaf0.978
SRR3591708Shoot apex19.124
SRR3591709Stem31.795
SRR3591710White floral bud4.554
SRR3591711White flower4.481
SRR3591712Green floral bud7.815
SRR3591713Yellow flower1.474
SRP173429 SRR8316895Juvenile bud stage 23.452
SRR8316896Juvenile bud stage 28.551
SRR8316897Juvenile bud stage 27.607
SRR8316894Third green stage 10.468
SRR8316900Third green stage 19.613
SRR8316901Third green stage 24.845
SRR8316898Complete white stage 3.285
SRR8316899Complete white stage 23.694
SRR8316903Complete white stage 6.880
SRR8316902Silver flowering stage3.128
SRR8316904Silver flowering stage2.377
SRR8316905Silver flowering stage0.983
SRR8316906Gold flowering stage 3.327
SRR8316907Gold flowering stage 2.334
SRR8316908Gold flowering stage 10.440
SRP132670SRR6706286Control11.465
SRR6706287Light intensity 50%17.017
SRR6706288Light intensity 20%17.748
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.471
CNS0095593Slightly white alabastrum(diploid) 234.648
CNS0095594Slightly white alabastrum(diploid) 329.511
CNS0095595Whole white alabastrum(diploid) 218.747
CNS0095596Whole white alabastrum(diploid) 312.949
CNS0095597Whole white alabastrum(diploid) 415.525
CNS0095598Silvery flower (diploied) 123.491
CNS0095599Silvery flower (diploied) 224.505
CNS0095600Silvery flower (diploied) 37.877
CNS0095601Golden flower (diploid) 118.242
CNS0095602Golden flower (diploid) 212.208
CNS0095603Golden flower (diploid) 310.578
CNS0095604Slightly white alabastrum(tetraploid) 115.342
CNS0095605Slightly white alabastrum(tetraploid) 211.586
CNS0095606Slightly white alabastrum(tetraploid) 324.212
CNS0095607Whole white alabastrum(tetraploid) 111.564
CNS0095608Whole white alabastrum(tetraploid) 212.184
CNS0095609Whole white alabastrum(tetraploid) 314.371
CNS0095610Silvery flower (tetraploid) 12.517
CNS0095611Silvery flower (tetraploid) 21.306
CNS0095612Silvery flower (tetraploid) 31.257
CNS0095613Golden flower (tetraploid) 10.717
CNS0095614Golden flower (tetraploid) 21.773
CNS0095615Golden flower (tetraploid) 30.245
CRA001975CRR073297Stem 121.391
CRR073298Stem 215.218
CRR073299Stem 315.663
CRR073300Leaf 120.302
CRR073301Leaf 227.013
CRR073302Leaf 313.616
CRR073303Juvenile bud 114.128
CRR073304Juvenile bud 29.093
CRR073305Juvenile bud 330.765
CRR073306Third green 18.261
CRR073307Third green 211.135
CRR073308Third green 311.377
CRR073309Second white 10.651
CRR073310Second white 20.760
CRR073311Second white 30.445
CRR073312Silver flowering 13.388
CRR073313Silver flowering 23.965
CRR073314Silver flowering 31.778
CRR073315Gold flowering 13.461
CRR073316Gold flowering 213.672
CRR073317Gold flowering 310.049
CRR073318Tawny withering 133.407
CRR073319Tawny withering 264.077
CRR073320Tawny withering 373.772