Gene detail

Detail information of GWHGAAZE016360

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007018369.1	Tubulin alpha-2 chain [Theobroma cacao]
Swissprot	tr\|P33623\|TBA1_ANEPH	Tubulin alpha-1 chain
trEMBL	tr\|A0A061FM71\|A0A061FM71_THECC	Tubulin alpha-2 chain {ECO:0000313\|EMBL:EOY15594.1}
TAIR10	AT1G50010.1	tubulin alpha-2 chain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	74709252	74713327	+
GWHAAZE00000004	mRNA	74709252	74713327	+
GWHAAZE00000004	exon	74709252	74709296	+
GWHAAZE00000004	exon	74710836	74711070	+
GWHAAZE00000004	exon	74711823	74712193	+
GWHAAZE00000004	exon	74712671	74713327	+
GWHAAZE00000004	CDS	74709252	74709296	+
GWHAAZE00000004	CDS	74710836	74711070	+
GWHAAZE00000004	CDS	74711823	74712193	+
GWHAAZE00000004	CDS	74712671	74713327	+

Transcript Sequence
>GWHTAAZE016380 ATGAGAGAGTGCATCTCTATTCACATTGGTCAGGCTGGTATTCAGCCTGATGGCCAGATGCCAAGTGACAAAACTGTAGGCGGAGGAGATGATGCTTTTAACACGTTTTTCAGTGAAACTGGAGCTGGAAAGCATGTCCCTCGTGCTATCTTCGTGGATCTTGAGCCCACAGTCATTGATGAAGTGAGAACTGGAGCTTACCGTCAGCTCTTTCACCCTGAACAACTCATCAGCGGCAAGGAAGATGCTGCTAACAACTTTGCCCGTGGCCACTATACCATTGGCAAAGAAATTGTTGATCTCTGCTTGGATCGTATACGTAAGCTTGCCGACAACTGTACTGGCCTTCAAGGATTCTTGGTCTTTAACGCCGTTGGCGGTGGCACTGGTTCTGGTCTTGGATCACTTCTTTTGGAGCGACTTTCGGTTGATTACGGAAAGAAGTCAAAGCTCGGTTTCACTGTTTATCCCTCCCCACAAGTCTCTACATCCGTTGTGGAGCCCTACAACAGTGTGCTTTCAACCCACTCCCTCCTTGAGCACACTGACGTCTCTGTACTTCTCGACAATGAGGCCATTTACGACATTTGCAGGCGCTCCCTTGACATTGAGCGCCCTACTTACACCAATCTCAACCGCCTTGTGTCTCAGGTGATTTCTTCACTTACGGCTTCATTGAGGTTTGATGGAGCACTCAACGTTGATGTGACTGAATTCCAAACCAACCTTGTACCCTACCCTAGGATCCACTTCATGCTTTCCTCGTATGCCCCTGTCATTTCGGCCGAGAAGGCATACCATGAGCAACTCTCAGTCGCTGAGATAACCAACAGTGCATTTGAACCGGCATCCATGATGGCCAAATGCGACCCTCGCCATGGTAAGTACATGGCTTGTTGCCTGATGTACCGTGGTGATGTGGTTCCCAAGGACGTTAATGCTGCAGTTGCCACTATCAAGACCAAGCGGACCATCCAGTTTGTGGACTGGTGCCCGACTGGATTCAAGTGCGGTATAAACTACCAACCACCTACAGTAGTTCCGGGTGGGGATTTGGCCAAGGTACAGAGGGCGGTGTGTATGATCTCTAACTCGACTAGTGTAGCCGAGGTGTTTAGTCGGATTGATCACAAGTTTGATCTTATGTATGCAAAGAGGGCATTTGTGCATTGGTATGTGGGTGAGGGAATGGAGGAAGGTGAGTTTAGCGAAGCTCGAGAGGATCTTGCAGCTTTGGAGAAGGATTATGAGGAGGTTGGTGCTGAGTCAGCTGAGGGTGATGAGGGTGATGAAGGAGAAGAGTATTGA

Network for GWHGAAZE016360

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00091.26	Tubulin	3	197	2.60E-57
PF03953.18	Tubulin_C	247	376	3.60E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07374	TUBA	Phagosome	map04145
		Apoptosis	map04210
		Tight junction	map04530
		Gap junction	map04540

Gene Ontology

GO term	Ontology	Name
GO:0007017	biological_process	microtubule-based process
GO:0005874	cellular_component	microtubule
GO:0003924	molecular_function	GTPase activity
GO:0005200	molecular_function	structural constituent of cytoskeleton
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1137.134
	SRR3591706	second leaf	124.586
	SRR3591707	mature leaf	19.588
	SRR3591708	Shoot apex	397.260
	SRR3591709	Stem	1330.064
	SRR3591710	White floral bud	1252.751
	SRR3591711	White flower	822.270
	SRR3591712	Green floral bud	935.515
	SRR3591713	Yellow flower	1051.819
SRP173429	SRR8316895	Juvenile bud stage	207.880
	SRR8316896	Juvenile bud stage	248.354
	SRR8316897	Juvenile bud stage	128.186
	SRR8316894	Third green stage	184.047
	SRR8316900	Third green stage	844.521
	SRR8316901	Third green stage	711.631
	SRR8316898	Complete white stage	375.054
	SRR8316899	Complete white stage	795.053
	SRR8316903	Complete white stage	518.204
	SRR8316902	Silver flowering stage	296.100
	SRR8316904	Silver flowering stage	431.394
	SRR8316905	Silver flowering stage	265.224
	SRR8316906	Gold flowering stage	432.058
	SRR8316907	Gold flowering stage	413.799
	SRR8316908	Gold flowering stage	715.495
SRP132670	SRR6706286	Control	995.538
	SRR6706287	Light intensity 50%	1386.256
	SRR6706288	Light intensity 20%	1561.861
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	533.266
	CNS0095593	Slightly white alabastrum(diploid) 2	860.981
	CNS0095594	Slightly white alabastrum(diploid) 3	447.941
	CNS0095595	Whole white alabastrum(diploid) 2	964.807
	CNS0095596	Whole white alabastrum(diploid) 3	1110.442
	CNS0095597	Whole white alabastrum(diploid) 4	1219.144
	CNS0095598	Silvery flower (diploied) 1	249.927
	CNS0095599	Silvery flower (diploied) 2	359.790
	CNS0095600	Silvery flower (diploied) 3	662.285
	CNS0095601	Golden flower (diploid) 1	280.897
	CNS0095602	Golden flower (diploid) 2	448.559
	CNS0095603	Golden flower (diploid) 3	439.196
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1156.304
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1015.113
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2076.558
	CNS0095607	Whole white alabastrum(tetraploid) 1	1199.781
	CNS0095608	Whole white alabastrum(tetraploid) 2	1395.793
	CNS0095609	Whole white alabastrum(tetraploid) 3	1774.636
	CNS0095610	Silvery flower (tetraploid) 1	499.647
	CNS0095611	Silvery flower (tetraploid) 2	630.087
	CNS0095612	Silvery flower (tetraploid) 3	861.881
	CNS0095613	Golden flower (tetraploid) 1	436.743
	CNS0095614	Golden flower (tetraploid) 2	294.733
	CNS0095615	Golden flower (tetraploid) 3	603.594
CRA001975	CRR073297	Stem 1	723.417
	CRR073298	Stem 2	728.092
	CRR073299	Stem 3	750.404
	CRR073300	Leaf 1	1781.611
	CRR073301	Leaf 2	1478.905
	CRR073302	Leaf 3	1940.891
	CRR073303	Juvenile bud 1	2080.401
	CRR073304	Juvenile bud 2	1786.465
	CRR073305	Juvenile bud 3	1778.634
	CRR073306	Third green 1	5827.451
	CRR073307	Third green 2	5376.295
	CRR073308	Third green 3	4498.909
	CRR073309	Second white 1	1765.768
	CRR073310	Second white 2	826.167
	CRR073311	Second white 3	711.379
	CRR073312	Silver flowering 1	838.237
	CRR073313	Silver flowering 2	761.405
	CRR073314	Silver flowering 3	513.316
	CRR073315	Gold flowering 1	285.691
	CRR073316	Gold flowering 2	151.828
	CRR073317	Gold flowering 3	109.806
	CRR073318	Tawny withering 1	816.962
	CRR073319	Tawny withering 2	596.929
	CRR073320	Tawny withering 3	1157.494