Gene detail

Detail information of GWHGAAZE016357

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002301126.1	hypothetical protein POPTR_0002s11230g [Populus trichocarpa]
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|B9GNA0\|B9GNA0_POPTR	Uncharacterized protein {ECO:0000313\|EMBL:EEE80399.1}
TAIR10	AT5G49660.1	Leucine-rich repeat transmembrane protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	74690777	74694131	+
GWHAAZE00000004	mRNA	74690777	74694131	+
GWHAAZE00000004	exon	74690777	74693264	+
GWHAAZE00000004	exon	74693737	74694131	+
GWHAAZE00000004	CDS	74690777	74693264	+
GWHAAZE00000004	CDS	74693737	74694131	+

Transcript Sequence
>GWHTAAZE016377 ATGGCGCTTCGAAGCATCTTCTTACCTCTCGTGTTATTATTTTCTCTAACGAATACTCATCAAGCCACCACAAGTGATCATCAAAGCCGGTTCTTTAGCCAAATGAATAATTCTCTCTCGGGGATCCCTTTGTCCGACTGGGATTTTAATGTGAAGCCTATATGCAACTTCACTGGTATCGGTTGCAACAACCAAGGCTCGGTTCTGAAGATCGACGTCTCTGATTGGTCACTCACCGGCCACTTCCCTGAAAATATATGTTCGTACCTCCCGGATTTGCGTATTCTTCGCCTTGGCAATAACAATCTACATGGCAACTTTCCCAAAAGCATCCTCAATTGCTCTCTCCTTGAAGAGCTAAACATGACTTCTACATATCTCATTGGCACTGTTCCAAACTTATCACCAATGGCGTCTCTCAAAATTCTTGATCTTTCGTACAACTATTTTACGGGCAAGTTCCCAATTTCGGTCACCAACCTCACCAATCTCGAGGTCCTAAACTTCAACGAAAACGGGGGTTTCGATCTCTGGCAGCTTCCCGAGAACGTTTCCGGCCTGACCAAGCTCAAGTCCATGGTACTAACAACATGCATGGTGTACGGTAGAATTCCCTCATCGATCGGTAACATGACTTCGCTTGTTGATCTTGAATTGAGCGGGAACTTCTTGGCGGGAAATATTCCAGTAGAGCTCGGATCACTCGAAAACTTGCAACAACTCGAGCTTTACTATAACCAACTCACAGGTCCCATACCCGATGAGCTTGGCAATCTAACGGCTCTCAGAGAGTTGGATATGTCGGTCAACAAGCTCACTGGAGTGTTGCCCGAATCTATATGTCGACTTCCCAAGCTTGAAGTGCTTTATCTGTACAATAACAGCCTCAGTGGAGAAATCCCGGGTTCGATTGAATCGTCAACAACCTTAACTATGTTATCACTATATGATAATTTCTTGACAGGTAACGTTCCAAGTCATTTAGGTGCGGCCTCGCCTATGATCGTCTTTGATTTATCAGAAAACCAGTTGTCTGGAGAAATGCCTGCAGAAGTGTGCAAAAATGGAAAGTTGCTATATTTTCTTCTCCTAGATAATATGTTCACCGGAAAACTGCCAGAAAGTTATGCTAAATGTGAGTCTCTTCTACGCTTTAGAGTTAGTTATAACCGTCTGGAGGGCTCAATACCCGAGGGGCTTTTGGGTCTACCCAAAGTATCGATCATTGATTTGGGTTACAATCAATTCAAAGGTTCGATAGCGAAAACATTGGGATTTGCGAAGAACTTGTCGGAGTTGTTGATGCAGAACAACAAGATATCAGGTACTCTACCAGCTGAAATATCTCAAGTCATCAATCTTGTAAAGCTTGATCTCAGTAATAATTTGATTTCCGGTCCAATACCTTTTGAGTTTGGCAACTTGAAAAAGCTCAATTTATTGCAACTACAAGGCAACAAGTTCGATTCTTCAATCCCAAATTCGCTATCCTTGCTAAAATCACTCAATGTTCTTGATTTGTCTCAAAATCTCTTGACCGGTAGTATCCCAGAAAGCCTCATTGAGTTGCTGCCGAATTCTATCAACTTCACTAACAATCACCTAACCGGTCCGATCCCTCTTTCATTTATAAAGGGAGGATTGTTAGAGTGCTTCTCGGGTAACCCAGGTCTATGTCTTCCCGTCTATGATCTCAGTCCAAAATATCCAAATTTCCCCATATGTCCGAGAACATATAATCATATCCGAAAGAAGATAAACAACACATGGTTGATTGGAGTTTCAGTCGGGATTGTCATTGTTGGAGTTTTCTTGTTTCTTAAGCGCTGGTTTAGCAAAGAACCAGCCATCATAGAGCACGAGGAGACTTTAACTTCCTCGCTTTTCTCATATGACGTTAAAAGCTTTCATCGAATAAGCATTGATCAGCGTGAAGTTCTAGAAGCCATGGTCGATAAGAACATAGTGGGGCACGGAGGATCAGGGACGGTATACAGAATTGACTTGAGAAATGGTGAAGTTGTTGCTGTGAAGAGGCTTTGGAGTCGAAAAACAAAAGATTCGGCCTTAGAAGACCATTTAGTTCTAGACAAGGAATTAAAAGCCGAGGTTGAAACTCTGGGAAGCATAAGGCACAAGAACATAGTGAAGTTGTATTGCTATTTCTCGAGTTTGGATTGCAAGTTGCTGATTTATGAGTATATGCCAAATGGTAACCTTTGGGACGCACTTCATGGAGGAGCGATTCATTTGGACTGGCCCATGCGTCATCAGATCGCGTTGGGGATAGCTCAGGGATTGGCGTACCTTCACCATGATCTGTTGATGCCAATTATTCATAGAGATATAAAGACGACTAATATTTTACTGGACGCCAATTACAAGCCAAAGGTAGCTGATTTTGGCATAGCTAAAGTTTTGCGAGCAAATGGAGGGAAAGATTCAAGTACTACTGTTATTGCAGGGACTTACGGTTACTTGGCCCCAGAATATGCATATTCATCCAAGGCAACGACCAAGTGCGATGTCTACAGTTTCGGAGTAGTGTTAATGGAGCTAATAACTGGGAAGAAACCAGTGGAGGTGGAGTTTGGGGAGAACAAGAACATTATATATTGGGTTTCAACCAAAGTGGAAACCAAAGAAGGAGCTATAGAGGTTCTAGACAGACGAATATCAGGGTCTTTCAAGGAGGAGATGATTAAGGTGCTTCGTATTGCCATCCGTTGTACATGTGGAGTCCCTGCTCTTCGACCAGCTATGAACGAGATTGTTCATATGCTGATCGAGGCCGACTCCTGCAGGTTCAACTCATCCAATTCAAAGGGGAATAAAGAAACAGTAAATGCTACTAAGTCTAAGAACCTATTTGATCAATTATGA

Network for GWHGAAZE016357

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	261	318	1.30E-06
PF00069.26	Pkinase	652	926	3.20E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.051
	SRR3591706	second leaf	2.192
	SRR3591707	mature leaf	5.571
	SRR3591708	Shoot apex	0.997
	SRR3591709	Stem	4.695
	SRR3591710	White floral bud	1.051
	SRR3591711	White flower	0.357
	SRR3591712	Green floral bud	0.976
	SRR3591713	Yellow flower	0.148
SRP173429	SRR8316895	Juvenile bud stage	0.502
	SRR8316896	Juvenile bud stage	0.858
	SRR8316897	Juvenile bud stage	0.468
	SRR8316894	Third green stage	0.419
	SRR8316900	Third green stage	0.313
	SRR8316901	Third green stage	0.372
	SRR8316898	Complete white stage	0.235
	SRR8316899	Complete white stage	1.945
	SRR8316903	Complete white stage	0.482
	SRR8316902	Silver flowering stage	0.221
	SRR8316904	Silver flowering stage	0.072
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.043
	SRR8316907	Gold flowering stage	0.049
	SRR8316908	Gold flowering stage	0.183
SRP132670	SRR6706286	Control	0.369
	SRR6706287	Light intensity 50%	0.407
	SRR6706288	Light intensity 20%	0.481
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.746
	CNS0095593	Slightly white alabastrum(diploid) 2	1.050
	CNS0095594	Slightly white alabastrum(diploid) 3	0.883
	CNS0095595	Whole white alabastrum(diploid) 2	0.618
	CNS0095596	Whole white alabastrum(diploid) 3	0.381
	CNS0095597	Whole white alabastrum(diploid) 4	0.826
	CNS0095598	Silvery flower (diploied) 1	1.595
	CNS0095599	Silvery flower (diploied) 2	1.125
	CNS0095600	Silvery flower (diploied) 3	0.758
	CNS0095601	Golden flower (diploid) 1	1.086
	CNS0095602	Golden flower (diploid) 2	1.367
	CNS0095603	Golden flower (diploid) 3	1.076
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.839
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.819
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.858
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.143
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.395
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.601
	CNS0095610	Silvery flower (tetraploid) 1	0.185
	CNS0095611	Silvery flower (tetraploid) 2	0.760
	CNS0095612	Silvery flower (tetraploid) 3	0.093
	CNS0095613	Golden flower (tetraploid) 1	0.024
	CNS0095614	Golden flower (tetraploid) 2	0.165
	CNS0095615	Golden flower (tetraploid) 3	0.168
CRA001975	CRR073297	Stem 1	1.146
	CRR073298	Stem 2	0.688
	CRR073299	Stem 3	1.053
	CRR073300	Leaf 1	0.861
	CRR073301	Leaf 2	0.703
	CRR073302	Leaf 3	0.248
	CRR073303	Juvenile bud 1	1.067
	CRR073304	Juvenile bud 2	0.227
	CRR073305	Juvenile bud 3	2.283
	CRR073306	Third green 1	0.066
	CRR073307	Third green 2	0.024
	CRR073308	Third green 3	0.317
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.015
	CRR073311	Second white 3	0.073
	CRR073312	Silver flowering 1	0.024
	CRR073313	Silver flowering 2	0.001
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.199
	CRR073316	Gold flowering 2	2.024
	CRR073317	Gold flowering 3	1.495
	CRR073318	Tawny withering 1	3.699
	CRR073319	Tawny withering 2	3.504
	CRR073320	Tawny withering 3	1.998