Gene detail

Detail information of GWHGAAZE016352

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05917.1	1.11372E-73	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9M0Y8\|NSF_ARATH	2E-70	Vesicle-fusing ATPase
trEMBL	tr\|A0A068UCA9\|A0A068UCA9_COFCA	4E-74	Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313\|EMBL:CDP05917.1}
TAIR10	AT4G04910.1	3E-62	AAA-type ATPase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	74454286	74456848	-
GWHAAZE00000004	mRNA	74454286	74456848	-
GWHAAZE00000004	exon	74454286	74454436	-
GWHAAZE00000004	exon	74454540	74454622	-
GWHAAZE00000004	exon	74454710	74454772	-
GWHAAZE00000004	exon	74454891	74454946	-
GWHAAZE00000004	exon	74455053	74455140	-
GWHAAZE00000004	exon	74455301	74455412	-
GWHAAZE00000004	exon	74455921	74456096	-
GWHAAZE00000004	exon	74456416	74456586	-
GWHAAZE00000004	exon	74456685	74456735	-
GWHAAZE00000004	exon	74456819	74456848	-
GWHAAZE00000004	CDS	74456819	74456848	-
GWHAAZE00000004	CDS	74456685	74456735	-
GWHAAZE00000004	CDS	74456416	74456586	-
GWHAAZE00000004	CDS	74455921	74456096	-
GWHAAZE00000004	CDS	74455301	74455412	-
GWHAAZE00000004	CDS	74455053	74455140	-
GWHAAZE00000004	CDS	74454891	74454946	-
GWHAAZE00000004	CDS	74454710	74454772	-
GWHAAZE00000004	CDS	74454540	74454622	-
GWHAAZE00000004	CDS	74454286	74454436	-

Transcript Sequence
>GWHTAAZE016372 ATGAGTTCAAGTTCAACTCCTACTAAACAAATCACCTCATCTGAGTTTGGGAGAAATTTTAGAAAGAAGTTCAACAAACATGTCTTCACGGAGTACCAGAGCGTGGTGCTTAGGATTGAGGGAATGGTGTTTAAATGCACGGTGGGTGATTTCCCATTTGCACGGACAGGGGAAACTGGGTCATCTTTGGTTAAGCGAGGGATGGTGCACAACGACACAAAAGTCTCGGTGGAGGTGTCTGATCCCCGGCTGTCAAAAAATATTACTGGAGCCTACTCCTTCCAAGGAATTTTCCGTAGGGATTTGAAAATGGAGTCTATAGAAGCCGAGCTGATGTCAAATGGTATTGGAGGGATGACATCACAGCTAATGGATATTCTTAACCTTGCTTTCGGCTCTCGTATGCTACCGCATTTGTTGGCAAAGAGGTTAAAGATGAAACATGTGAAAGGAATGCTATTATATGGTCCACCAGGCACGGGAAAAACTCTAGTAGCCCGAACCATCTGCAAATTGCTCAAAAACGTAAAAGAGCCAAAGATTGTAAATGGACCAGAGATCTTTGAATCACATTTTGGAAAGTCGGAGGCAAAAATTCGATCACTTTTCGACGATGCCATTTCGGATGGATCGCGAAGTAAGCTGCACATCATTATTTTCGATGAATTAGATTCAATTGCAGGGAAACGAGGAGACACAGAAATAAACAAGTGGACTGATAAAATTGTCAATCAATTGCTCACAATGATTGATGGGGTAACTGAATTGCAAAATATCTTCATCATTGGAACAACCAACAGAAAGGACCTTATTGATGAAGCCCTTTTAAGGCATGGTAGAATCGAGTTGCACATCGAGCTCACCCACCCAGACGCCAAAGGGCGCGCAAAGATTCTTGAAATCTATTGTAGAGATTGGATAGAAGCTTCCCTTGTGGACGAAGATGTCAATCTTCAAGAAATTGGTAAATTCGAATTTTAA

Network for GWHGAAZE016352

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.30	AAA	152	287	7.10E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06027	NSF, SEC18	Autophagy - yeast	map04138
		Vasopressin-regulated water reabsorption	map04962
		GABAergic synapse	map04727
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.138
	SRR8316897	Juvenile bud stage	2.101
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.048
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.444
	SRR8316907	Gold flowering stage	0.167
	SRR8316908	Gold flowering stage	7.776
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.026
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.067
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.264
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.143
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.263
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.495
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.745
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.552
	CNS0095610	Silvery flower (tetraploid) 1	0.040
	CNS0095611	Silvery flower (tetraploid) 2	0.016
	CNS0095612	Silvery flower (tetraploid) 3	0.808
	CNS0095613	Golden flower (tetraploid) 1	0.403
	CNS0095614	Golden flower (tetraploid) 2	0.353
	CNS0095615	Golden flower (tetraploid) 3	0.012
CRA001975	CRR073297	Stem 1	0.135
	CRR073298	Stem 2	0.025
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000