Detail information of GWHGAAZE016307


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010664369.10PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X2 [Vitis vinifera]
Swissprottr|Q9SJT9|COPA2_ARATH5E-10Coatomer subunit alpha-2
trEMBLtr|A0A067LAC0|A0A067LAC0_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP41455.1}
TAIR10AT5G10940.20transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7327567173289539-
GWHAAZE00000004mRNA7327567173289539-
GWHAAZE00000004exon7328945073289539-
GWHAAZE00000004exon7328785673287990-
GWHAAZE00000004exon7328764473287751-
GWHAAZE00000004exon7328740573287533-
GWHAAZE00000004exon7328484373284958-
GWHAAZE00000004exon7328464273284759-
GWHAAZE00000004exon7328366873283773-
GWHAAZE00000004exon7328223073282375-
GWHAAZE00000004exon7328196673282136-
GWHAAZE00000004exon7328176573281875-
GWHAAZE00000004exon7327964273279753-
GWHAAZE00000004exon7327842773278779-
GWHAAZE00000004exon7327819473278284-
GWHAAZE00000004exon7327710273277197-
GWHAAZE00000004exon7327691173276981-
GWHAAZE00000004exon7327626673276393-
GWHAAZE00000004exon7327567173275752-
GWHAAZE00000004CDS7328945073289539-
GWHAAZE00000004CDS7328785673287990-
GWHAAZE00000004CDS7328764473287751-
GWHAAZE00000004CDS7328740573287533-
GWHAAZE00000004CDS7328484373284958-
GWHAAZE00000004CDS7328464273284759-
GWHAAZE00000004CDS7328366873283773-
GWHAAZE00000004CDS7328223073282375-
GWHAAZE00000004CDS7328196673282136-
GWHAAZE00000004CDS7328176573281875-
GWHAAZE00000004CDS7327964273279753-
GWHAAZE00000004CDS7327842773278779-
GWHAAZE00000004CDS7327819473278284-
GWHAAZE00000004CDS7327710273277197-
GWHAAZE00000004CDS7327691173276981-
GWHAAZE00000004CDS7327626673276393-
GWHAAZE00000004CDS7327567173275752-
Transcript Sequence

Network for GWHGAAZE016307

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD402352.10E-05
PF00400.33WD406186530.019
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.730
SRR3591706second leaf5.944
SRR3591707mature leaf6.693
SRR3591708Shoot apex7.436
SRR3591709Stem11.932
SRR3591710White floral bud13.250
SRR3591711White flower16.160
SRR3591712Green floral bud10.184
SRR3591713Yellow flower15.776
SRP173429 SRR8316895Juvenile bud stage 7.496
SRR8316896Juvenile bud stage 10.969
SRR8316897Juvenile bud stage 5.078
SRR8316894Third green stage 5.557
SRR8316900Third green stage 15.350
SRR8316901Third green stage 12.696
SRR8316898Complete white stage 6.123
SRR8316899Complete white stage 18.151
SRR8316903Complete white stage 9.724
SRR8316902Silver flowering stage6.764
SRR8316904Silver flowering stage11.754
SRR8316905Silver flowering stage5.592
SRR8316906Gold flowering stage 16.107
SRR8316907Gold flowering stage 15.999
SRR8316908Gold flowering stage 17.410
SRP132670SRR6706286Control6.850
SRR6706287Light intensity 50%8.313
SRR6706288Light intensity 20%8.608
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.497
CNS0095593Slightly white alabastrum(diploid) 27.247
CNS0095594Slightly white alabastrum(diploid) 310.365
CNS0095595Whole white alabastrum(diploid) 26.744
CNS0095596Whole white alabastrum(diploid) 37.735
CNS0095597Whole white alabastrum(diploid) 48.920
CNS0095598Silvery flower (diploied) 111.973
CNS0095599Silvery flower (diploied) 28.532
CNS0095600Silvery flower (diploied) 316.818
CNS0095601Golden flower (diploid) 19.278
CNS0095602Golden flower (diploid) 214.140
CNS0095603Golden flower (diploid) 313.447
CNS0095604Slightly white alabastrum(tetraploid) 19.509
CNS0095605Slightly white alabastrum(tetraploid) 26.822
CNS0095606Slightly white alabastrum(tetraploid) 313.280
CNS0095607Whole white alabastrum(tetraploid) 17.948
CNS0095608Whole white alabastrum(tetraploid) 26.704
CNS0095609Whole white alabastrum(tetraploid) 311.451
CNS0095610Silvery flower (tetraploid) 120.145
CNS0095611Silvery flower (tetraploid) 220.494
CNS0095612Silvery flower (tetraploid) 320.070
CNS0095613Golden flower (tetraploid) 112.412
CNS0095614Golden flower (tetraploid) 218.018
CNS0095615Golden flower (tetraploid) 316.916
CRA001975CRR073297Stem 19.705
CRR073298Stem 210.684
CRR073299Stem 36.911
CRR073300Leaf 111.974
CRR073301Leaf 29.786
CRR073302Leaf 38.661
CRR073303Juvenile bud 110.416
CRR073304Juvenile bud 25.354
CRR073305Juvenile bud 39.398
CRR073306Third green 15.905
CRR073307Third green 24.310
CRR073308Third green 35.996
CRR073309Second white 18.153
CRR073310Second white 210.728
CRR073311Second white 313.141
CRR073312Silver flowering 18.995
CRR073313Silver flowering 28.654
CRR073314Silver flowering 35.385
CRR073315Gold flowering 15.353
CRR073316Gold flowering 29.217
CRR073317Gold flowering 33.564
CRR073318Tawny withering 17.558
CRR073319Tawny withering 26.476
CRR073320Tawny withering 36.226