Gene detail

Detail information of GWHGAAZE016261

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002307379.1	cryptochrome 1 family protein [Populus trichocarpa]
Swissprot	tr\|Q43125\|CRY1_ARATH	Cryptochrome-1
trEMBL	tr\|B9H731\|B9H731_POPTR	Cryptochrome 1 family protein {ECO:0000313\|EMBL:EEE94375.1}
TAIR10	AT4G08920.1	cryptochrome 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	72416863	72421452	+
GWHAAZE00000004	mRNA	72416863	72421452	+
GWHAAZE00000004	exon	72416863	72417178	+
GWHAAZE00000004	exon	72417913	72418131	+
GWHAAZE00000004	exon	72419551	72420257	+
GWHAAZE00000004	exon	72420682	72421452	+
GWHAAZE00000004	CDS	72416863	72417178	+
GWHAAZE00000004	CDS	72417913	72418131	+
GWHAAZE00000004	CDS	72419551	72420257	+
GWHAAZE00000004	CDS	72420682	72421452	+

Transcript Sequence
>GWHTAAZE016281 ATGATGTCAATTGGTGGGTGTAATATAGTTTGGTTTAGGAGAGATCTGAGGGTTGAAGATAACCCAGCTTTAGCAGCAGGGGTTAGAGCAGGGGCAGTAATAGCTGTGTTTATATGGGCTCCTGAGGAAGAAGGTCACTATTACCCAGGTAGGGTTTCAAGGTGGTGGCTAAAACAAAGCTTGGGTTACCTTGATTCCTCTTTGAAAAGCCTTGGAACTCCACTAATCACCAAAAGATCCACTGATAGTGTTTCTTCTCTGCTTGAGATTGTTAAATCCACTGGTGCTAAACAGATCTTCTTTAATCACTTATATGATCCCTTGTCACTTGTTAGGGATCACCGGGCAAAGGAGATTTTAACTACGCAAGGCATTGGTGTTCGTTCGTTCAATGCTGACCTGTTGTATGAACCATGGGAAGTTCTTGATGAGCAAGATCAGCCATTCAACACGTTTTCCGCTTTTTGGGATCGATGCCTTAGCATGCCTTATGATCCCGAGGCTCCACTTCTACCGCCCAAGCGGATAATATCTGGTGATGTGACTAGGTGCCCTTCGGACGCATTAATATTCGAAGACGAATCAGAGAAAGGAAGCAATGCACTTCTTGCTCGGGCATGGTCACCGGGGTGGAGCAATGCTGATAAGGCACTTACCACATTCATCAATGGCCCACTAATAGAATACTCCATGAACCGCCGTAAGGCTGATAGCGCCACCACCTCCTTTCTCTCTCCTCACCTTCACTTTGGTGAAGTGAGCGTTCGAAAGGTCTTTCACCTTGTTCGCATGAAACAAGTCCTTTGGGCCAATGAAGGGAACAAAGCCGGGGAAGAGAGTGTCAACTTGTTCCTCAAGTCCATTGGTCTTAGGGAATATTCTAGATACATGAGTTTTAACCATCCTTATAGCCACGAAAGGCCTCTTCTCGGCCATTTGAAGTTCTTCCCTTGGATAATAAACGAAGGGTATTTTAAGGCATGGAGGCAAGGGAGAACAGGTTACCCATTGGTTGATGCGGGCATGAGGGAGTTGTGGGCTACAGGTTGGCTACACGATCGGATACGGGTTGTGGTGTCTAGTTTCTTTGTGAAGGTTCTACAACTTCCATGGAGATGGGGCATGAAGTATTTCTGGGATACACTATTGGATGCGGATCTTGAGAGTGATGCTCTTGGTTGGCAATATATATCTGGCACTCTACCTGATGGGCGCGAGTTTGACCGCATAGATAATCCACAGTTTGAGGGCTACAAGTTCGACCCAAATGGAGAGTACGTGAGGAGGTGGCTTCCAGAACTTGCAAGACTACCGACCAATTGGATACACCACCCATGGAATGCACCGGAATCTGTACTACAAGCAGCCGGAATCGAGCTAGGCTCTAATTACCCTCTCCCCATTGTCAGTATCGAAGCTGCCAAATCCCGTTTACAAGAAGCACTCTCACAGATGTGGCAACACGAAGCAGCTTCTCGAGCCATTATCGAGAATGGAACGGAAGAAGGCCTCGGAGACTCCTTTGATACACTCCCCATCGCGTTTCCCCAGGACACACACATGGAGGACGATCAAGAAACTACCAGAAATATCCCCGCCGCTACCACCATTCGTCGCTACGAGGACCAAATGGTCCCCAGCATGACCACTTCTTTGGTAATAAGAGTAGAAGAGGAAGAAAATTTCTCCGAGGTTCAGAATTTAGCGGAGGAGAGCCGGGCCGAAGTTCCAACAGAAGTCAATATGATGAATCAAGAACCAAGGAGAGATGGGTTTGCCCAGACACTCCGGACCAATAATAATCTGCCAAGTTTCAATGGTGAAGACTCTACGGCCGATTCTTCGAGTAGTAGTAGTGGGAGGAGAGAAAGAGATGGGGGTGTGGTTCCAGTCTGGTCGCCCTCGGCTTCTAATTATTCGGAGCAGTTTGTTGGTGAAGAGAATTCGTACTTGCAGAGGCATCCACAGTCTCATCAACTTATCAACTGGAGGCAGCTTTCTCAAACCGGGTAA

Network for GWHGAAZE016261

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00875.19	DNA_photolyase	9	164	4.00E-39
PF03441.15	FAD_binding_7	284	482	2.60E-63
PF12546.9	Cryptochrome_C	512	618	3.00E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12118	CRY1	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0009785	biological_process	blue light signaling pathway
GO:0009882	molecular_function	blue light photoreceptor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	120.856
	SRR3591706	second leaf	95.492
	SRR3591707	mature leaf	135.173
	SRR3591708	Shoot apex	95.419
	SRR3591709	Stem	121.922
	SRR3591710	White floral bud	45.222
	SRR3591711	White flower	52.988
	SRR3591712	Green floral bud	35.860
	SRR3591713	Yellow flower	43.567
SRP173429	SRR8316895	Juvenile bud stage	27.407
	SRR8316896	Juvenile bud stage	32.789
	SRR8316897	Juvenile bud stage	15.408
	SRR8316894	Third green stage	17.901
	SRR8316900	Third green stage	34.197
	SRR8316901	Third green stage	36.198
	SRR8316898	Complete white stage	24.655
	SRR8316899	Complete white stage	79.413
	SRR8316903	Complete white stage	46.323
	SRR8316902	Silver flowering stage	22.366
	SRR8316904	Silver flowering stage	30.497
	SRR8316905	Silver flowering stage	16.006
	SRR8316906	Gold flowering stage	50.727
	SRR8316907	Gold flowering stage	47.580
	SRR8316908	Gold flowering stage	42.495
SRP132670	SRR6706286	Control	63.930
	SRR6706287	Light intensity 50%	59.647
	SRR6706288	Light intensity 20%	55.258
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.967
	CNS0095593	Slightly white alabastrum(diploid) 2	21.893
	CNS0095594	Slightly white alabastrum(diploid) 3	19.218
	CNS0095595	Whole white alabastrum(diploid) 2	19.137
	CNS0095596	Whole white alabastrum(diploid) 3	11.917
	CNS0095597	Whole white alabastrum(diploid) 4	15.358
	CNS0095598	Silvery flower (diploied) 1	40.059
	CNS0095599	Silvery flower (diploied) 2	33.276
	CNS0095600	Silvery flower (diploied) 3	61.328
	CNS0095601	Golden flower (diploid) 1	35.351
	CNS0095602	Golden flower (diploid) 2	61.190
	CNS0095603	Golden flower (diploid) 3	59.607
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.178
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.238
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.443
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.254
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.226
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.872
	CNS0095610	Silvery flower (tetraploid) 1	44.212
	CNS0095611	Silvery flower (tetraploid) 2	42.879
	CNS0095612	Silvery flower (tetraploid) 3	12.964
	CNS0095613	Golden flower (tetraploid) 1	20.082
	CNS0095614	Golden flower (tetraploid) 2	38.400
	CNS0095615	Golden flower (tetraploid) 3	52.909
CRA001975	CRR073297	Stem 1	47.221
	CRR073298	Stem 2	43.123
	CRR073299	Stem 3	39.992
	CRR073300	Leaf 1	47.591
	CRR073301	Leaf 2	50.161
	CRR073302	Leaf 3	30.915
	CRR073303	Juvenile bud 1	44.001
	CRR073304	Juvenile bud 2	31.210
	CRR073305	Juvenile bud 3	77.176
	CRR073306	Third green 1	35.072
	CRR073307	Third green 2	28.282
	CRR073308	Third green 3	33.005
	CRR073309	Second white 1	16.898
	CRR073310	Second white 2	19.371
	CRR073311	Second white 3	18.292
	CRR073312	Silver flowering 1	15.111
	CRR073313	Silver flowering 2	10.705
	CRR073314	Silver flowering 3	12.636
	CRR073315	Gold flowering 1	63.916
	CRR073316	Gold flowering 2	103.181
	CRR073317	Gold flowering 3	89.472
	CRR073318	Tawny withering 1	41.230
	CRR073319	Tawny withering 2	30.121
	CRR073320	Tawny withering 3	34.818