Gene detail

Detail information of GWHGAAZE016155

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011100620.1	0	PREDICTED: probable choline kinase 1 [Sesamum indicum]
Swissprot	tr\|Q9SZ92\|CK3_ARATH	1E-163	Probable choline kinase 3
trEMBL	tr\|M5VXX2\|M5VXX2_PRUPE	5E-180	Uncharacterized protein {ECO:0000313\|EMBL:EMJ01818.1}
TAIR10	AT4G09760.2	4E-128	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	70432329	70435383	+
GWHAAZE00000004	mRNA	70432329	70435383	+
GWHAAZE00000004	exon	70432329	70432661	+
GWHAAZE00000004	exon	70432940	70433061	+
GWHAAZE00000004	exon	70433865	70434060	+
GWHAAZE00000004	exon	70434250	70434367	+
GWHAAZE00000004	exon	70434737	70434784	+
GWHAAZE00000004	exon	70434959	70435059	+
GWHAAZE00000004	exon	70435154	70435383	+
GWHAAZE00000004	CDS	70432329	70432661	+
GWHAAZE00000004	CDS	70432940	70433061	+
GWHAAZE00000004	CDS	70433865	70434060	+
GWHAAZE00000004	CDS	70434250	70434367	+
GWHAAZE00000004	CDS	70434737	70434784	+
GWHAAZE00000004	CDS	70434959	70435059	+
GWHAAZE00000004	CDS	70435154	70435267	+
GWHAAZE00000004	three_prime_UTR	70435268	70435383	+

Transcript Sequence
>GWHTAAZE016175 ATGGCGATAAAGACCAACAGTCTACCGGAGGAGCTAAAAACCCTAATATTATTGTTGGCTTCAAAATGGGGAGATGAGATGAATTTGAAGAGCTTAAATGTGACTCATTTAAGTGGTGCTATGACTAATGAGGTCTATAGAGTAAGCTGGCCCTCACACATTAAAGATGTTGTTAGAACCATTTTAGTTCGGGTTTATGGTGAAGGCGTCGATGTTTTCTTTAATCGCGATGATGAAATTCGGACTTTTGAATTCATTTCGATGCACGGGCATGGTCCTAAGCTTCTTGGGCATTTTCCGGGAGGGCGAGTTGAGGAGTTCATTCATGCTCGGACACTCTCGGCTGGTGACCTTCGTGAACCTGAAATATCAGTTGTAATAGCAACTAAAATGAGGGAGTTTCATAACCTTGACGTGTCTGGTCCCAAGGATGTAGATCTATGGGATAGAATGAGAAACTGGCTTAGTAAGGCAAAAAATATGATCTCCTCTGAACATGCAAAAGAATTTTCTTTGGAGAATTTGGAGGAGGAAATTGCAATGCTGGAAAAGGAGCTCTCCAACGAGTACCAAGAGATTGGATTTTGTCACAATGACCTTCAATATGGCAACATAATGATCGATGAAACGACCAAATCCATCACTATAATTGATTATGAGTATGCTAGTTACAATCCTGTTGCTTATGACCTTGCGTGCCACTTTTGTGAAATGGCAGCAAATTATCACTCTGAGATGCCACATATTTTGGACTATAGTATATACCCGGGGCTCGAGGAGCGCCAAAGATTTGTCCGAGCATATCTTACATCCCCAGGCCACGAACCAAGCGATTCGGAGATAGAGAAACTTGTCAATGATGTAGAGAAGTATACTCTTGCTAACCATCTTTTTTGGTGCTTGTGGGGAATACTCTCGGCGTATGTGAACAAGATTGAGTTCGATTACCTGGAATACGCAAGGCAAAGGTTTCAGCAGTACTGGTTGAAGAAGCCTCAAATCTTGGATGGAAGACAAGTCTCCCTGAAATGATGGCCCAAAGTGTTCTTGCTGATTTTTTACTGCATCAATCAATTGCCTTTATATCTATATACTGAATTGTGTAAACCATTATAAGGACCCAAAAAGCTTATAATTAGCATATATAC

Network for GWHGAAZE016155

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01633.21	Choline_kinase	59	259	1.90E-66

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14156	CHK	Metabolic pathways	map01100
K14156	CHK	Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.002
	SRR3591706	second leaf	0.383
	SRR3591707	mature leaf	0.546
	SRR3591708	Shoot apex	0.727
	SRR3591709	Stem	1.062
	SRR3591710	White floral bud	3.241
	SRR3591711	White flower	6.302
	SRR3591712	Green floral bud	1.275
	SRR3591713	Yellow flower	25.307
SRP173429	SRR8316895	Juvenile bud stage	0.743
	SRR8316896	Juvenile bud stage	2.621
	SRR8316897	Juvenile bud stage	1.708
	SRR8316894	Third green stage	0.901
	SRR8316900	Third green stage	1.267
	SRR8316901	Third green stage	1.510
	SRR8316898	Complete white stage	4.791
	SRR8316899	Complete white stage	5.125
	SRR8316903	Complete white stage	3.134
	SRR8316902	Silver flowering stage	11.915
	SRR8316904	Silver flowering stage	14.297
	SRR8316905	Silver flowering stage	6.967
	SRR8316906	Gold flowering stage	74.447
	SRR8316907	Gold flowering stage	34.827
	SRR8316908	Gold flowering stage	90.363
SRP132670	SRR6706286	Control	2.967
	SRR6706287	Light intensity 50%	1.513
	SRR6706288	Light intensity 20%	1.406
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.220
	CNS0095593	Slightly white alabastrum(diploid) 2	2.844
	CNS0095594	Slightly white alabastrum(diploid) 3	3.825
	CNS0095595	Whole white alabastrum(diploid) 2	0.874
	CNS0095596	Whole white alabastrum(diploid) 3	0.030
	CNS0095597	Whole white alabastrum(diploid) 4	0.881
	CNS0095598	Silvery flower (diploied) 1	3.843
	CNS0095599	Silvery flower (diploied) 2	1.844
	CNS0095600	Silvery flower (diploied) 3	9.929
	CNS0095601	Golden flower (diploid) 1	7.326
	CNS0095602	Golden flower (diploid) 2	11.331
	CNS0095603	Golden flower (diploid) 3	13.713
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.553
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.437
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.767
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.193
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.378
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.333
	CNS0095610	Silvery flower (tetraploid) 1	4.957
	CNS0095611	Silvery flower (tetraploid) 2	0.760
	CNS0095612	Silvery flower (tetraploid) 3	3.856
	CNS0095613	Golden flower (tetraploid) 1	16.718
	CNS0095614	Golden flower (tetraploid) 2	23.531
	CNS0095615	Golden flower (tetraploid) 3	0.985
CRA001975	CRR073297	Stem 1	0.438
	CRR073298	Stem 2	0.322
	CRR073299	Stem 3	0.211
	CRR073300	Leaf 1	0.072
	CRR073301	Leaf 2	1.217
	CRR073302	Leaf 3	0.258
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.554
	CRR073306	Third green 1	0.318
	CRR073307	Third green 2	0.125
	CRR073308	Third green 3	0.548
	CRR073309	Second white 1	4.471
	CRR073310	Second white 2	3.289
	CRR073311	Second white 3	3.767
	CRR073312	Silver flowering 1	21.276
	CRR073313	Silver flowering 2	22.413
	CRR073314	Silver flowering 3	20.044
	CRR073315	Gold flowering 1	1.157
	CRR073316	Gold flowering 2	1.859
	CRR073317	Gold flowering 3	3.679
	CRR073318	Tawny withering 1	57.315
	CRR073319	Tawny withering 2	54.119
	CRR073320	Tawny withering 3	16.974