Detail information of GWHGAAZE016152


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008237480.10PREDICTED: protein GIGANTEA [Prunus mume]
Swissprottr|Q9SQI2|GIGAN_ARATH0Protein GIGANTEA
trEMBLtr|M5VIM2|M5VIM2_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ00887.1}
TAIR10AT1G22770.10gigantea protein (GI)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7035603570364393-
GWHAAZE00000004mRNA7035603570364393-
GWHAAZE00000004exon7035603570356337-
GWHAAZE00000004exon7035703970357131-
GWHAAZE00000004exon7035769570357907-
GWHAAZE00000004exon7035841570358483-
GWHAAZE00000004exon7035942570359450-
GWHAAZE00000004exon7035966470359718-
GWHAAZE00000004exon7036004570361490-
GWHAAZE00000004exon7036227370362482-
GWHAAZE00000004exon7036360770363757-
GWHAAZE00000004exon7036418870364393-
GWHAAZE00000004CDS7036418870364393-
GWHAAZE00000004CDS7036360770363757-
GWHAAZE00000004CDS7036227370362482-
GWHAAZE00000004CDS7036004570361490-
GWHAAZE00000004CDS7035966470359718-
GWHAAZE00000004CDS7035942570359450-
GWHAAZE00000004CDS7035841570358483-
GWHAAZE00000004CDS7035769570357907-
GWHAAZE00000004CDS7035703970357131-
GWHAAZE00000004CDS7035603570356337-
Transcript Sequence

Network for GWHGAAZE016152

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12124GI Circadian rhythm - plant map04712

Gene Ontology

GO term OntologyName
GO:2000028biological_processregulation of photoperiodism, flowering

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.293
SRR3591706second leaf21.052
SRR3591707mature leaf32.403
SRR3591708Shoot apex29.585
SRR3591709Stem35.351
SRR3591710White floral bud96.861
SRR3591711White flower96.905
SRR3591712Green floral bud68.964
SRR3591713Yellow flower73.008
SRP173429 SRR8316895Juvenile bud stage 45.035
SRR8316896Juvenile bud stage 61.947
SRR8316897Juvenile bud stage 24.482
SRR8316894Third green stage 26.251
SRR8316900Third green stage 59.053
SRR8316901Third green stage 64.553
SRR8316898Complete white stage 26.235
SRR8316899Complete white stage 86.232
SRR8316903Complete white stage 74.608
SRR8316902Silver flowering stage33.574
SRR8316904Silver flowering stage57.815
SRR8316905Silver flowering stage24.751
SRR8316906Gold flowering stage 62.991
SRR8316907Gold flowering stage 66.199
SRR8316908Gold flowering stage 58.910
SRP132670SRR6706286Control64.023
SRR6706287Light intensity 50%67.669
SRR6706288Light intensity 20%70.714
CNP0000432CNS0095592Slightly white alabastrum(diploid) 131.821
CNS0095593Slightly white alabastrum(diploid) 231.843
CNS0095594Slightly white alabastrum(diploid) 330.053
CNS0095595Whole white alabastrum(diploid) 235.218
CNS0095596Whole white alabastrum(diploid) 328.745
CNS0095597Whole white alabastrum(diploid) 434.314
CNS0095598Silvery flower (diploied) 161.194
CNS0095599Silvery flower (diploied) 245.332
CNS0095600Silvery flower (diploied) 3117.632
CNS0095601Golden flower (diploid) 154.506
CNS0095602Golden flower (diploid) 2113.476
CNS0095603Golden flower (diploid) 3107.171
CNS0095604Slightly white alabastrum(tetraploid) 135.330
CNS0095605Slightly white alabastrum(tetraploid) 226.202
CNS0095606Slightly white alabastrum(tetraploid) 359.445
CNS0095607Whole white alabastrum(tetraploid) 128.001
CNS0095608Whole white alabastrum(tetraploid) 224.362
CNS0095609Whole white alabastrum(tetraploid) 346.238
CNS0095610Silvery flower (tetraploid) 195.449
CNS0095611Silvery flower (tetraploid) 2120.472
CNS0095612Silvery flower (tetraploid) 377.419
CNS0095613Golden flower (tetraploid) 157.537
CNS0095614Golden flower (tetraploid) 283.481
CNS0095615Golden flower (tetraploid) 3146.786
CRA001975CRR073297Stem 199.756
CRR073298Stem 292.161
CRR073299Stem 383.201
CRR073300Leaf 196.837
CRR073301Leaf 295.296
CRR073302Leaf 364.080
CRR073303Juvenile bud 173.992
CRR073304Juvenile bud 258.995
CRR073305Juvenile bud 3111.257
CRR073306Third green 16.019
CRR073307Third green 27.981
CRR073308Third green 310.884
CRR073309Second white 110.629
CRR073310Second white 210.145
CRR073311Second white 316.202
CRR073312Silver flowering 119.436
CRR073313Silver flowering 223.779
CRR073314Silver flowering 319.237
CRR073315Gold flowering 146.469
CRR073316Gold flowering 266.869
CRR073317Gold flowering 357.638
CRR073318Tawny withering 161.236
CRR073319Tawny withering 250.179
CRR073320Tawny withering 362.379