Detail information of GWHGAAZE016141


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009600913.10PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 isoform X1 [Nicotiana tomentosiformis]
Swissprottr|Q9SRE0|5FCLL_ARATH1E-1785-formyltetrahydrofolate cyclo-ligase-like protein COG0212 (Precursor)
trEMBLtr|K4BTG0|K4BTG0_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc04g071700.2.1}
TAIR10AT1G76730.11E-141NagB/RpiA/CoA transferase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7014585170151930+
GWHAAZE00000004mRNA7014585170151930+
GWHAAZE00000004exon7014585170146300+
GWHAAZE00000004exon7014699670147086+
GWHAAZE00000004exon7014857670148802+
GWHAAZE00000004exon7015011870150193+
GWHAAZE00000004exon7015089570151020+
GWHAAZE00000004exon7015127570151492+
GWHAAZE00000004exon7015160070151930+
GWHAAZE00000004five_prime_UTR7014585170145910+
GWHAAZE00000004CDS7014591170146300+
GWHAAZE00000004CDS7014699670147086+
GWHAAZE00000004CDS7014857670148802+
GWHAAZE00000004CDS7015011870150193+
GWHAAZE00000004CDS7015089570151020+
GWHAAZE00000004CDS7015127570151426+
GWHAAZE00000004three_prime_UTR7015142770151492+
GWHAAZE00000004three_prime_UTR7015160070151930+
Transcript Sequence

Network for GWHGAAZE016141

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01812.215-FTHF_cyc-lig912894.80E-40
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01934MTHFS Metabolic pathways map01100
One carbon pool by folatemap00670

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.400
SRR3591706second leaf18.656
SRR3591707mature leaf15.528
SRR3591708Shoot apex13.045
SRR3591709Stem3.607
SRR3591710White floral bud12.579
SRR3591711White flower4.488
SRR3591712Green floral bud14.606
SRR3591713Yellow flower2.838
SRP173429 SRR8316895Juvenile bud stage 5.615
SRR8316896Juvenile bud stage 8.053
SRR8316897Juvenile bud stage 4.000
SRR8316894Third green stage 2.967
SRR8316900Third green stage 11.328
SRR8316901Third green stage 10.999
SRR8316898Complete white stage 2.860
SRR8316899Complete white stage 10.168
SRR8316903Complete white stage 3.837
SRR8316902Silver flowering stage1.454
SRR8316904Silver flowering stage2.759
SRR8316905Silver flowering stage1.236
SRR8316906Gold flowering stage 5.937
SRR8316907Gold flowering stage 4.525
SRR8316908Gold flowering stage 4.190
SRP132670SRR6706286Control8.328
SRR6706287Light intensity 50%8.161
SRR6706288Light intensity 20%8.972
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.102
CNS0095593Slightly white alabastrum(diploid) 28.342
CNS0095594Slightly white alabastrum(diploid) 37.453
CNS0095595Whole white alabastrum(diploid) 214.424
CNS0095596Whole white alabastrum(diploid) 314.290
CNS0095597Whole white alabastrum(diploid) 417.716
CNS0095598Silvery flower (diploied) 17.300
CNS0095599Silvery flower (diploied) 25.511
CNS0095600Silvery flower (diploied) 36.839
CNS0095601Golden flower (diploid) 14.781
CNS0095602Golden flower (diploid) 26.216
CNS0095603Golden flower (diploid) 36.048
CNS0095604Slightly white alabastrum(tetraploid) 114.604
CNS0095605Slightly white alabastrum(tetraploid) 216.460
CNS0095606Slightly white alabastrum(tetraploid) 38.673
CNS0095607Whole white alabastrum(tetraploid) 125.230
CNS0095608Whole white alabastrum(tetraploid) 226.081
CNS0095609Whole white alabastrum(tetraploid) 315.850
CNS0095610Silvery flower (tetraploid) 18.321
CNS0095611Silvery flower (tetraploid) 211.850
CNS0095612Silvery flower (tetraploid) 310.524
CNS0095613Golden flower (tetraploid) 15.998
CNS0095614Golden flower (tetraploid) 27.747
CNS0095615Golden flower (tetraploid) 35.057
CRA001975CRR073297Stem 110.695
CRR073298Stem 210.292
CRR073299Stem 310.860
CRR073300Leaf 111.568
CRR073301Leaf 211.499
CRR073302Leaf 312.411
CRR073303Juvenile bud 114.220
CRR073304Juvenile bud 210.014
CRR073305Juvenile bud 310.678
CRR073306Third green 13.943
CRR073307Third green 22.431
CRR073308Third green 33.810
CRR073309Second white 15.467
CRR073310Second white 26.701
CRR073311Second white 33.515
CRR073312Silver flowering 13.978
CRR073313Silver flowering 27.014
CRR073314Silver flowering 34.077
CRR073315Gold flowering 137.336
CRR073316Gold flowering 237.841
CRR073317Gold flowering 334.927
CRR073318Tawny withering 15.706
CRR073319Tawny withering 23.859
CRR073320Tawny withering 35.107