Gene detail

Detail information of GWHGAAZE016135

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007214931.1	5.8573E-145	hypothetical protein PRUPE_ppa001351mg [Prunus persica]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	6E-108	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|M5XAQ1\|M5XAQ1_PRUPE	2E-145	Uncharacterized protein {ECO:0000313\|EMBL:EMJ16130.1}
TAIR10	AT4G08850.1	6E-81	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	69927938	69929802	-
GWHAAZE00000004	mRNA	69927938	69929802	-
GWHAAZE00000004	exon	69928725	69929802	-
GWHAAZE00000004	exon	69927938	69928158	-
GWHAAZE00000004	CDS	69928725	69929802	-
GWHAAZE00000004	CDS	69927938	69928158	-

Transcript Sequence
>GWHTAAZE016155 ATGTTCGAAAAAGGCATTCCTATCCGAATAAGCAATTTGCGGTCTCTCCAAAATCTTGATCTTAGTCAAAATTTGTTAAGTGGGATTGTACCACGACAGCTTGGAGGGTTAAAATACTTAGAGACTTTGAATCTTTCTCACAATAACCTCTATGGTTCTATTGAATCTACTTTTGAAGGAATGTTGAGTTTGATATCATTTGATATTTCCTTTAATCAACTTGAGGGCCCTTTGCCCAATATTAGAGCCGTTCAAGAGGCTCCATTTGAGGCACTTAGAGATAATAAAGGCCTTTGCGGCAATGTCACTTTCTTGAAATTTTGCTCCACTGTTCTAACCAAAGGAAAAAAAGGCAAAAATATTTGGATTTTAATTACTTTTCCTCTTGTGGGAATTTTGGTTCTTTTGTTAATTATTGGTGGGGTCGGATTTTATCTTCGTCGAAGAGTGATTAAGGAAAATAACGCAAAGGATGAAAGAACAATCGAAAATGAAGACTTGTTTGTGATATGGAGCTATGATGGAAAAATGGTGCATGAAAAAATAATTGAAGCCACAGGGGCATTTAGTTCCGCATATTGCATTGGGGAAGGAGGATATGGTAGTGTTTATAAAGCTCAATTGCCAAATGGTATGGTTGTAGCTGTGAAAAAACTACATGAAAGTGAAAATTTGGGTAGTCTAAAGAGTTTTACTAGTGAGATCCAAGTATTAACCGAAATACGGCACCGAAATATCGTCAAATTTTATGGGTTTTGTTCACATCCAAGGCACTCGTTTTTGGTTTACGAGTTTGTAGAAGGGTGTAGTTTGAGAGAGATGTTGGGCAACGAGGCGAAAGCCATAGCATTTGATTGGATGAAGAGGGTAAATGTTATTAGGGGCGTTTCAAATGCGTTGTGTTATATGCACCATGGTTGTTCTCCTTCCATTATTCATCGAGACATATCGAGTAAGAATGTTTTGTTGGATTCGGAGTTTGAACCATGTGTAGCCGATTTTGGAGCGGCTAGGTTTTTAAATCCAGACTCATCTAATTGGACTTCATTTGTTGGAACTTTTGGGTATTCGGCTCCAGATGTGGTGGACCGACGACTATCAACACCTTGGAATCAAGAGGCCGAGGAAGTGGCCTTTGTTGTGAAGGTAGCTTTTGCTTGTCTGAATCCAAATCCGCCATCTCGACCAACAATGCAACGAGTTTCTATGCAGCTCTCAAAATCAAGATCGCTTTTTGATATTCCATTCCATCTTATTACATTAGGGCGACTTTTTAATATCGAATGTTTGTCTTCTTGA

Network for GWHGAAZE016135

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	11	50	1.90E-07
PF00069.26	Pkinase	194	364	2.90E-35

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.178
	SRR3591706	second leaf	0.294
	SRR3591707	mature leaf	6.851
	SRR3591708	Shoot apex	0.222
	SRR3591709	Stem	0.325
	SRR3591710	White floral bud	0.274
	SRR3591711	White flower	0.786
	SRR3591712	Green floral bud	0.105
	SRR3591713	Yellow flower	0.414
SRP173429	SRR8316895	Juvenile bud stage	0.038
	SRR8316896	Juvenile bud stage	0.138
	SRR8316897	Juvenile bud stage	0.091
	SRR8316894	Third green stage	0.052
	SRR8316900	Third green stage	0.053
	SRR8316901	Third green stage	0.123
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.147
	SRR8316904	Silver flowering stage	0.129
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.174
	SRR8316907	Gold flowering stage	0.595
	SRR8316908	Gold flowering stage	0.394
SRP132670	SRR6706286	Control	0.041
	SRR6706287	Light intensity 50%	0.009
	SRR6706288	Light intensity 20%	0.078
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.182
	CNS0095593	Slightly white alabastrum(diploid) 2	0.015
	CNS0095594	Slightly white alabastrum(diploid) 3	0.324
	CNS0095595	Whole white alabastrum(diploid) 2	0.268
	CNS0095596	Whole white alabastrum(diploid) 3	0.085
	CNS0095597	Whole white alabastrum(diploid) 4	0.139
	CNS0095598	Silvery flower (diploied) 1	0.187
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.402
	CNS0095601	Golden flower (diploid) 1	0.386
	CNS0095602	Golden flower (diploid) 2	0.154
	CNS0095603	Golden flower (diploid) 3	0.223
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.049
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.119
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.507
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.187
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.254
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.230
	CNS0095610	Silvery flower (tetraploid) 1	0.322
	CNS0095611	Silvery flower (tetraploid) 2	0.634
	CNS0095612	Silvery flower (tetraploid) 3	0.734
	CNS0095613	Golden flower (tetraploid) 1	0.238
	CNS0095614	Golden flower (tetraploid) 2	0.171
	CNS0095615	Golden flower (tetraploid) 3	0.176
CRA001975	CRR073297	Stem 1	0.039
	CRR073298	Stem 2	0.067
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.094
	CRR073301	Leaf 2	0.044
	CRR073302	Leaf 3	0.046
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.426
	CRR073307	Third green 2	0.257
	CRR073308	Third green 3	0.819
	CRR073309	Second white 1	1.362
	CRR073310	Second white 2	1.428
	CRR073311	Second white 3	1.233
	CRR073312	Silver flowering 1	0.627
	CRR073313	Silver flowering 2	0.223
	CRR073314	Silver flowering 3	0.860
	CRR073315	Gold flowering 1	2.096
	CRR073316	Gold flowering 2	2.080
	CRR073317	Gold flowering 3	0.197
	CRR073318	Tawny withering 1	0.365
	CRR073319	Tawny withering 2	0.762
	CRR073320	Tawny withering 3	0.285