Detail information of GWHGAAZE016088


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011101874.10PREDICTED: small RNA degrading nuclease 5 isoform X1 [Sesamum indicum]
Swissprottr|Q8L7M4|SDN5_ARATH0Small RNA degrading nuclease 5
trEMBLtr|F6H092|F6H092_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB46093.1}
TAIR10AT5G25800.10Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene6895908468978444-
GWHAAZE00000004mRNA6895908468978444-
GWHAAZE00000004exon6897820268978444-
GWHAAZE00000004exon6897545768975522-
GWHAAZE00000004exon6897450468974637-
GWHAAZE00000004exon6897429668974408-
GWHAAZE00000004exon6896850968968637-
GWHAAZE00000004exon6896832668968396-
GWHAAZE00000004exon6896591768965976-
GWHAAZE00000004exon6896559668965651-
GWHAAZE00000004exon6896530768965367-
GWHAAZE00000004exon6896470168964972-
GWHAAZE00000004exon6896308268963196-
GWHAAZE00000004exon6896093968961237-
GWHAAZE00000004exon6895908468959207-
GWHAAZE00000004CDS6897820268978444-
GWHAAZE00000004CDS6897545768975522-
GWHAAZE00000004CDS6897450468974637-
GWHAAZE00000004CDS6897429668974408-
GWHAAZE00000004CDS6896850968968637-
GWHAAZE00000004CDS6896832668968396-
GWHAAZE00000004CDS6896591768965976-
GWHAAZE00000004CDS6896559668965651-
GWHAAZE00000004CDS6896530768965367-
GWHAAZE00000004CDS6896470168964972-
GWHAAZE00000004CDS6896308268963196-
GWHAAZE00000004CDS6896093968961237-
GWHAAZE00000004CDS6895908468959207-
Transcript Sequence

Network for GWHGAAZE016088

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00929.25RNase_T2473934.00E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14570REX1, REXO1, RNH70 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.506
SRR3591706second leaf8.687
SRR3591707mature leaf8.698
SRR3591708Shoot apex15.480
SRR3591709Stem15.050
SRR3591710White floral bud11.889
SRR3591711White flower13.809
SRR3591712Green floral bud14.098
SRR3591713Yellow flower15.467
SRP173429 SRR8316895Juvenile bud stage 14.545
SRR8316896Juvenile bud stage 21.003
SRR8316897Juvenile bud stage 8.072
SRR8316894Third green stage 9.534
SRR8316900Third green stage 23.121
SRR8316901Third green stage 18.408
SRR8316898Complete white stage 6.500
SRR8316899Complete white stage 23.231
SRR8316903Complete white stage 9.831
SRR8316902Silver flowering stage5.173
SRR8316904Silver flowering stage8.069
SRR8316905Silver flowering stage3.684
SRR8316906Gold flowering stage 10.477
SRR8316907Gold flowering stage 9.688
SRR8316908Gold flowering stage 8.610
SRP132670SRR6706286Control7.979
SRR6706287Light intensity 50%11.604
SRR6706288Light intensity 20%10.568
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.757
CNS0095593Slightly white alabastrum(diploid) 213.484
CNS0095594Slightly white alabastrum(diploid) 314.637
CNS0095595Whole white alabastrum(diploid) 211.341
CNS0095596Whole white alabastrum(diploid) 312.840
CNS0095597Whole white alabastrum(diploid) 411.943
CNS0095598Silvery flower (diploied) 111.073
CNS0095599Silvery flower (diploied) 212.386
CNS0095600Silvery flower (diploied) 316.630
CNS0095601Golden flower (diploid) 112.569
CNS0095602Golden flower (diploid) 215.982
CNS0095603Golden flower (diploid) 316.211
CNS0095604Slightly white alabastrum(tetraploid) 113.496
CNS0095605Slightly white alabastrum(tetraploid) 210.357
CNS0095606Slightly white alabastrum(tetraploid) 319.868
CNS0095607Whole white alabastrum(tetraploid) 17.706
CNS0095608Whole white alabastrum(tetraploid) 27.502
CNS0095609Whole white alabastrum(tetraploid) 315.730
CNS0095610Silvery flower (tetraploid) 112.750
CNS0095611Silvery flower (tetraploid) 215.641
CNS0095612Silvery flower (tetraploid) 39.230
CNS0095613Golden flower (tetraploid) 17.500
CNS0095614Golden flower (tetraploid) 210.010
CNS0095615Golden flower (tetraploid) 311.196
CRA001975CRR073297Stem 113.083
CRR073298Stem 214.062
CRR073299Stem 313.266
CRR073300Leaf 110.383
CRR073301Leaf 28.264
CRR073302Leaf 39.076
CRR073303Juvenile bud 110.092
CRR073304Juvenile bud 28.919
CRR073305Juvenile bud 39.941
CRR073306Third green 11.878
CRR073307Third green 21.451
CRR073308Third green 31.209
CRR073309Second white 13.103
CRR073310Second white 23.068
CRR073311Second white 33.130
CRR073312Silver flowering 12.456
CRR073313Silver flowering 21.630
CRR073314Silver flowering 31.455
CRR073315Gold flowering 17.606
CRR073316Gold flowering 28.874
CRR073317Gold flowering 35.302
CRR073318Tawny withering 16.385
CRR073319Tawny withering 24.519
CRR073320Tawny withering 36.587