Detail information of GWHGAAZE016008


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKGN44200.11.20591E-38hypothetical protein Csa_7G220830 [Cucumis sativus]
Swissprottr|Q6DBN1|Y4845_ARATH1E-35BTB/POZ domain-containing protein At4g08455
trEMBLtr|A0A0A0K3D3|A0A0A0K3D3_CUCSA4E-39Uncharacterized protein {ECO:0000313|EMBL:KGN44200.1}
TAIR10AT4G08455.17E-20BTB/POZ domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene6640081566401216+
GWHAAZE00000004mRNA6640081566401216+
GWHAAZE00000004exon6640081566401216+
GWHAAZE00000004CDS6640081566401216+
Transcript Sequence

Network for GWHGAAZE016008

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10523SPOP Hedgehog signaling pathway map04340
Hedgehog signaling pathway - flymap04341

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.100
SRR3591706second leaf4.695
SRR3591707mature leaf6.244
SRR3591708Shoot apex11.977
SRR3591709Stem10.387
SRR3591710White floral bud10.543
SRR3591711White flower12.799
SRR3591712Green floral bud10.925
SRR3591713Yellow flower9.532
SRP173429 SRR8316895Juvenile bud stage 16.452
SRR8316896Juvenile bud stage 18.479
SRR8316897Juvenile bud stage 10.700
SRR8316894Third green stage 3.954
SRR8316900Third green stage 13.658
SRR8316901Third green stage 17.854
SRR8316898Complete white stage 6.058
SRR8316899Complete white stage 26.536
SRR8316903Complete white stage 6.127
SRR8316902Silver flowering stage5.658
SRR8316904Silver flowering stage8.916
SRR8316905Silver flowering stage4.926
SRR8316906Gold flowering stage 15.043
SRR8316907Gold flowering stage 15.560
SRR8316908Gold flowering stage 10.414
SRP132670SRR6706286Control13.125
SRR6706287Light intensity 50%12.382
SRR6706288Light intensity 20%13.718
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.176
CNS0095593Slightly white alabastrum(diploid) 217.246
CNS0095594Slightly white alabastrum(diploid) 315.602
CNS0095595Whole white alabastrum(diploid) 212.756
CNS0095596Whole white alabastrum(diploid) 34.997
CNS0095597Whole white alabastrum(diploid) 46.440
CNS0095598Silvery flower (diploied) 111.475
CNS0095599Silvery flower (diploied) 222.219
CNS0095600Silvery flower (diploied) 320.892
CNS0095601Golden flower (diploid) 121.391
CNS0095602Golden flower (diploid) 219.868
CNS0095603Golden flower (diploid) 320.010
CNS0095604Slightly white alabastrum(tetraploid) 18.321
CNS0095605Slightly white alabastrum(tetraploid) 26.719
CNS0095606Slightly white alabastrum(tetraploid) 315.652
CNS0095607Whole white alabastrum(tetraploid) 16.239
CNS0095608Whole white alabastrum(tetraploid) 23.706
CNS0095609Whole white alabastrum(tetraploid) 37.897
CNS0095610Silvery flower (tetraploid) 113.486
CNS0095611Silvery flower (tetraploid) 210.443
CNS0095612Silvery flower (tetraploid) 39.172
CNS0095613Golden flower (tetraploid) 15.240
CNS0095614Golden flower (tetraploid) 29.755
CNS0095615Golden flower (tetraploid) 36.271
CRA001975CRR073297Stem 112.925
CRR073298Stem 216.247
CRR073299Stem 319.967
CRR073300Leaf 119.484
CRR073301Leaf 219.882
CRR073302Leaf 313.410
CRR073303Juvenile bud 113.031
CRR073304Juvenile bud 212.822
CRR073305Juvenile bud 318.239
CRR073306Third green 18.068
CRR073307Third green 26.866
CRR073308Third green 38.817
CRR073309Second white 110.178
CRR073310Second white 27.210
CRR073311Second white 36.463
CRR073312Silver flowering 14.895
CRR073313Silver flowering 27.847
CRR073314Silver flowering 34.737
CRR073315Gold flowering 19.928
CRR073316Gold flowering 28.872
CRR073317Gold flowering 37.751
CRR073318Tawny withering 114.140
CRR073319Tawny withering 29.501
CRR073320Tawny withering 311.294