Detail information of GWHGAAZE015951


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN83645.11.86995E-63hypothetical protein VITISV_016194 [Vitis vinifera]
Swissprottr|Q9XI07|SWI3C_ARATH3E-54SWI/SNF complex subunit SWI3C
trEMBLtr|A5BW71|A5BW71_VITVI7E-64Putative uncharacterized protein {ECO:0000313|EMBL:CAN83645.1}
TAIR10AT1G21700.11E-32SWITCH/sucrose nonfermenting 3C

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene6420481564209381+
GWHAAZE00000004mRNA6420481564209381+
GWHAAZE00000004exon6420481564204951+
GWHAAZE00000004exon6420603364206106+
GWHAAZE00000004exon6420618964206373+
GWHAAZE00000004exon6420912764209381+
GWHAAZE00000004CDS6420481564204951+
GWHAAZE00000004CDS6420603364206106+
GWHAAZE00000004CDS6420618964206373+
GWHAAZE00000004CDS6420912764209381+
Transcript Sequence

Network for GWHGAAZE015951

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16495.6SWIRM-assoc_11011713.90E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11649SMARCC Thermogenesis map04714

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.363
SRR3591706second leaf20.712
SRR3591707mature leaf20.832
SRR3591708Shoot apex15.864
SRR3591709Stem23.649
SRR3591710White floral bud13.121
SRR3591711White flower10.925
SRR3591712Green floral bud11.575
SRR3591713Yellow flower7.179
SRP173429 SRR8316895Juvenile bud stage 13.200
SRR8316896Juvenile bud stage 18.778
SRR8316897Juvenile bud stage 8.451
SRR8316894Third green stage 10.308
SRR8316900Third green stage 18.962
SRR8316901Third green stage 17.343
SRR8316898Complete white stage 7.684
SRR8316899Complete white stage 29.410
SRR8316903Complete white stage 14.306
SRR8316902Silver flowering stage8.832
SRR8316904Silver flowering stage6.568
SRR8316905Silver flowering stage4.606
SRR8316906Gold flowering stage 9.536
SRR8316907Gold flowering stage 13.384
SRR8316908Gold flowering stage 11.972
SRP132670SRR6706286Control19.115
SRR6706287Light intensity 50%19.266
SRR6706288Light intensity 20%18.879
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.383
CNS0095593Slightly white alabastrum(diploid) 214.341
CNS0095594Slightly white alabastrum(diploid) 317.494
CNS0095595Whole white alabastrum(diploid) 216.681
CNS0095596Whole white alabastrum(diploid) 317.367
CNS0095597Whole white alabastrum(diploid) 418.429
CNS0095598Silvery flower (diploied) 120.660
CNS0095599Silvery flower (diploied) 213.083
CNS0095600Silvery flower (diploied) 314.051
CNS0095601Golden flower (diploid) 116.902
CNS0095602Golden flower (diploid) 212.811
CNS0095603Golden flower (diploid) 313.579
CNS0095604Slightly white alabastrum(tetraploid) 117.517
CNS0095605Slightly white alabastrum(tetraploid) 213.628
CNS0095606Slightly white alabastrum(tetraploid) 318.537
CNS0095607Whole white alabastrum(tetraploid) 119.614
CNS0095608Whole white alabastrum(tetraploid) 213.212
CNS0095609Whole white alabastrum(tetraploid) 314.859
CNS0095610Silvery flower (tetraploid) 114.508
CNS0095611Silvery flower (tetraploid) 213.317
CNS0095612Silvery flower (tetraploid) 311.606
CNS0095613Golden flower (tetraploid) 111.216
CNS0095614Golden flower (tetraploid) 211.326
CNS0095615Golden flower (tetraploid) 310.496
CRA001975CRR073297Stem 127.162
CRR073298Stem 227.295
CRR073299Stem 321.094
CRR073300Leaf 125.526
CRR073301Leaf 223.157
CRR073302Leaf 321.056
CRR073303Juvenile bud 127.079
CRR073304Juvenile bud 215.353
CRR073305Juvenile bud 324.332
CRR073306Third green 16.190
CRR073307Third green 25.582
CRR073308Third green 36.001
CRR073309Second white 13.859
CRR073310Second white 26.445
CRR073311Second white 36.776
CRR073312Silver flowering 12.980
CRR073313Silver flowering 23.494
CRR073314Silver flowering 33.440
CRR073315Gold flowering 116.904
CRR073316Gold flowering 220.236
CRR073317Gold flowering 311.730
CRR073318Tawny withering 128.092
CRR073319Tawny withering 217.929
CRR073320Tawny withering 324.833