Gene detail

Detail information of GWHGAAZE015924

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006472809.1	0	PREDICTED: replication factor C subunit 3-like [Citrus sinensis]
Swissprot	tr\|Q9CAQ8\|RFC5_ARATH	0	Replication factor C subunit 5
trEMBL	tr\|V4T2V7\|V4T2V7_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR47477.1}
TAIR10	AT1G77470.1	2E-163	replication factor C subunit 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	63319245	63330584	+
GWHAAZE00000004	mRNA	63319245	63330584	+
GWHAAZE00000004	exon	63319245	63319437	+
GWHAAZE00000004	exon	63319870	63320086	+
GWHAAZE00000004	exon	63323004	63323083	+
GWHAAZE00000004	exon	63323175	63323334	+
GWHAAZE00000004	exon	63326550	63326631	+
GWHAAZE00000004	exon	63329162	63329291	+
GWHAAZE00000004	exon	63329400	63329463	+
GWHAAZE00000004	exon	63329542	63329610	+
GWHAAZE00000004	exon	63330485	63330584	+
GWHAAZE00000004	CDS	63319245	63319437	+
GWHAAZE00000004	CDS	63319870	63320086	+
GWHAAZE00000004	CDS	63323004	63323083	+
GWHAAZE00000004	CDS	63323175	63323334	+
GWHAAZE00000004	CDS	63326550	63326631	+
GWHAAZE00000004	CDS	63329162	63329291	+
GWHAAZE00000004	CDS	63329400	63329463	+
GWHAAZE00000004	CDS	63329542	63329610	+
GWHAAZE00000004	CDS	63330485	63330584	+

Transcript Sequence
>GWHTAAZE015940 ATGGCGGAAGTAATCTCTCTCATGGACATTGACGACAACGAAGATAACCACTCACTCAAACCAAACAACAAGGGCAAAAATGTCGCCGTTTCCGGCAGCAACCCACCGGACACCAAAGCTACGCCGTGGGTCGAGAAGTACCGACCTCAGTCCCTCGCTGACGTGGCTGCTCATCGCGACATCGTTGATACAATTGATAGGCTTACAAGTGAGAACAAGTTACCTCATTTGCTTCTGTACGGACCACCCGGTACGGGCAAGACGTCGACAATTCTCGCGGTGGCTAGGAAGCTTTATGGGTCGCAGATGCATAATATGGTTTTGGAGCTGAATGCGTCTGATGATCGTGGAATTGAGGTTGTTAGGCAACAGATTCAGGACTTTGCTAGCACTCAGAGCTTTTCATTTGGCCCAAAATCCTCTGTAAAGTTAGTCCTCTTGGATGAGGCAGATGCCATGACAAAGGACGCACAATTTGCTCTTCGTCGAGTGATTGAGAAATATACAAAAAACACCAGGTTCTCTCTTATCTGTAATCACGTCAACAAGATAATTCCAGCACTGCAATCAAGATGCACACGTTTTAGGTTTGCTCCACTAGATGCTGTTCATGTCAGTGAGCGACTAAAACATGTTATTGCGGCTGAAGGGCTTGATGTTCCTGAGAGTGGCTTAGCGGCACTTGTTCGGCTTTGCAATGGTGACATGAGGAAGGCTCTGAACATTTTGCAGTCAACACATATGGCTTCTCATCAGATAACAGAAGAGGCGGTCTACTTATGCACTGGAAACCCATTACCCAAAGACATTGAGCAAATATCTTACTGGCTTCTCAACGAGTCATTTTCAGAAACCTTTAGACGAATAACTCAAATGAAGACTATAAAGGGATTGGCTTTGGTTGACATTGTGAGAGAAGTAACAATGTTTGTTTTTAAGATCAAGATGCCATCAGATGTTCGAGTTCAGCTGATTAATGACTTGGCCGATATCGAGTATAGGTTGAGTTTTGGGTGTAACGACAAGTTGCAACTCGGATCGCTCATCTCTACTTTTGCCCGAGCTAGATCTGCACTGGTTGCTGCCGCAAAGTAA

Network for GWHGAAZE015924

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.30	AAA	77	197	4.90E-16
PF08542.12	Rep_fac_C	265	350	1.30E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10756	RFC3_5	DNA replication	map03030
		Nucleotide excision repair	map03420
		Mismatch repair	map03430

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0005524	molecular_function	ATP binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.400
	SRR3591706	second leaf	10.593
	SRR3591707	mature leaf	12.433
	SRR3591708	Shoot apex	32.611
	SRR3591709	Stem	12.298
	SRR3591710	White floral bud	13.974
	SRR3591711	White flower	20.231
	SRR3591712	Green floral bud	17.712
	SRR3591713	Yellow flower	12.993
SRP173429	SRR8316895	Juvenile bud stage	8.890
	SRR8316896	Juvenile bud stage	12.067
	SRR8316897	Juvenile bud stage	4.456
	SRR8316894	Third green stage	3.992
	SRR8316900	Third green stage	9.353
	SRR8316901	Third green stage	8.204
	SRR8316898	Complete white stage	2.414
	SRR8316899	Complete white stage	12.187
	SRR8316903	Complete white stage	3.052
	SRR8316902	Silver flowering stage	3.274
	SRR8316904	Silver flowering stage	3.567
	SRR8316905	Silver flowering stage	1.634
	SRR8316906	Gold flowering stage	6.122
	SRR8316907	Gold flowering stage	7.012
	SRR8316908	Gold flowering stage	8.523
SRP132670	SRR6706286	Control	11.065
	SRR6706287	Light intensity 50%	9.721
	SRR6706288	Light intensity 20%	10.790
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.775
	CNS0095593	Slightly white alabastrum(diploid) 2	8.964
	CNS0095594	Slightly white alabastrum(diploid) 3	8.631
	CNS0095595	Whole white alabastrum(diploid) 2	6.693
	CNS0095596	Whole white alabastrum(diploid) 3	4.810
	CNS0095597	Whole white alabastrum(diploid) 4	4.546
	CNS0095598	Silvery flower (diploied) 1	7.258
	CNS0095599	Silvery flower (diploied) 2	8.715
	CNS0095600	Silvery flower (diploied) 3	6.280
	CNS0095601	Golden flower (diploid) 1	6.096
	CNS0095602	Golden flower (diploid) 2	6.571
	CNS0095603	Golden flower (diploid) 3	6.935
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.687
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.577
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.085
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.054
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.837
	CNS0095610	Silvery flower (tetraploid) 1	10.720
	CNS0095611	Silvery flower (tetraploid) 2	12.362
	CNS0095612	Silvery flower (tetraploid) 3	11.187
	CNS0095613	Golden flower (tetraploid) 1	5.658
	CNS0095614	Golden flower (tetraploid) 2	7.433
	CNS0095615	Golden flower (tetraploid) 3	5.542
CRA001975	CRR073297	Stem 1	12.999
	CRR073298	Stem 2	12.314
	CRR073299	Stem 3	17.770
	CRR073300	Leaf 1	10.249
	CRR073301	Leaf 2	11.032
	CRR073302	Leaf 3	10.293
	CRR073303	Juvenile bud 1	11.761
	CRR073304	Juvenile bud 2	7.902
	CRR073305	Juvenile bud 3	9.885
	CRR073306	Third green 1	0.778
	CRR073307	Third green 2	0.836
	CRR073308	Third green 3	0.752
	CRR073309	Second white 1	1.685
	CRR073310	Second white 2	3.971
	CRR073311	Second white 3	1.424
	CRR073312	Silver flowering 1	1.326
	CRR073313	Silver flowering 2	1.534
	CRR073314	Silver flowering 3	2.123
	CRR073315	Gold flowering 1	10.295
	CRR073316	Gold flowering 2	12.785
	CRR073317	Gold flowering 3	9.138
	CRR073318	Tawny withering 1	15.159
	CRR073319	Tawny withering 2	11.652
	CRR073320	Tawny withering 3	21.277