Gene detail

Detail information of GWHGAAZE015861

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADZ28516.1	2.697E-178	flavonol synthase [Camellia nitidissima]
Swissprot	tr\|Q07512\|FLS_PETHY	4E-180	Flavonol synthase/flavanone 3-hydroxylase
trEMBL	tr\|F1KLA0\|F1KLA0_9ERIC	1E-178	Flavonol synthase {ECO:0000313\|EMBL:ADZ28516.1}
TAIR10	AT5G08640.2	7E-103	flavonol synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	60710851	60715442	-
GWHAAZE00000004	mRNA	60710851	60715442	-
GWHAAZE00000004	exon	60710851	60711017	-
GWHAAZE00000004	exon	60711318	60711631	-
GWHAAZE00000004	exon	60714976	60715442	-
GWHAAZE00000004	CDS	60714976	60715442	-
GWHAAZE00000004	CDS	60711318	60711631	-
GWHAAZE00000004	CDS	60710851	60711017	-

Transcript Sequence
>GWHTAAZE015877 ATGGAGGTGGAGAGAGTACAAGCCATAGCTACACAATCCAAGTGCATGGACACAATCCCTTCCGAGTTTATTCGGTCTGAAAACGAGCAACCCTTGTTCACCACCCAGCACGGGGTGGTGCTAGAGGTCCCGGTGATTGACCTCAACCAACCGGACCAGCAAAACCTTGTCCGGTTGGTCTCAGACGCGAGCCGAGAGTGGGGCATATTCCAATTGGTGAACCATGGGATCCCAAATGAGGTTATAAGCAAGTTGCAAAGAGTTGGTAAAGAGTTCTTTGAGCTCCCACAAGAGGACAGAGAGGCATATGCTAAACCACCAGGTTACCAAGGTGTTGAGGGATATGGTACAAAGCTACAAAAGGAAGTTGAGGGCAAGAAAGGGTGGGTTGATCATTTGTTTCATAAGATATGGCCACCTTCTTCTATTGACTACCACTTTTGGCCTAAAAATCCTCCTTCTTACAGAGAAGCAAATGAGGAGTATGCAAATAGGTTGCAGAAGGTAGCAGACAAGTTGTTAGAGTGCCTTTCATTAGGGCTTGGACTTGAAGGCGGCGAAATTAAAGCTGCTATTGGTGGGGATGACCTAATTTACCTTATGAAAATCAATTATTACCCACCATGTCCTAGGCCTGACCTGGCACTGGGTGTGGTGGCCCACACTGACATGTCAGCAATCACAATTCTTGTTCCCAATGAGGTTCAAGGCCTCCAAGTCTTTAACAATGACCATTGGTATGATGTCAAGTACATCCCTAATGCCCTTGTCATTCACATTGTGAACAAAAAGATGACGAGAATGTCGTGGCCAGTTTTCCTAGAGCCACCATCGGAGCTCGAAAACGGTCCGATTCCAAAGCTTATAAATGAAGAGAATCCACCAAAATACAAGACCAAGAAGTATAAAGATTATGTGCATTGCAAGCTCAACAAGCTTCCTCAGTGA

Network for GWHGAAZE015861

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	43	150	2.30E-24
PF03171.21	2OG-FeII_Oxy	201	260	2.00E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05278	FLS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Flavonoid biosynthesis	map00941

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	107.906
	SRR3591706	second leaf	153.137
	SRR3591707	mature leaf	1.678
	SRR3591708	Shoot apex	99.624
	SRR3591709	Stem	39.897
	SRR3591710	White floral bud	49.072
	SRR3591711	White flower	432.420
	SRR3591712	Green floral bud	59.749
	SRR3591713	Yellow flower	251.745
SRP173429	SRR8316895	Juvenile bud stage	68.965
	SRR8316896	Juvenile bud stage	81.840
	SRR8316897	Juvenile bud stage	55.744
	SRR8316894	Third green stage	34.153
	SRR8316900	Third green stage	176.525
	SRR8316901	Third green stage	183.673
	SRR8316898	Complete white stage	40.223
	SRR8316899	Complete white stage	125.548
	SRR8316903	Complete white stage	65.355
	SRR8316902	Silver flowering stage	69.922
	SRR8316904	Silver flowering stage	68.615
	SRR8316905	Silver flowering stage	17.083
	SRR8316906	Gold flowering stage	81.623
	SRR8316907	Gold flowering stage	39.965
	SRR8316908	Gold flowering stage	43.530
SRP132670	SRR6706286	Control	167.145
	SRR6706287	Light intensity 50%	192.441
	SRR6706288	Light intensity 20%	216.547
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	97.057
	CNS0095593	Slightly white alabastrum(diploid) 2	131.470
	CNS0095594	Slightly white alabastrum(diploid) 3	80.913
	CNS0095595	Whole white alabastrum(diploid) 2	101.825
	CNS0095596	Whole white alabastrum(diploid) 3	59.431
	CNS0095597	Whole white alabastrum(diploid) 4	80.035
	CNS0095598	Silvery flower (diploied) 1	81.084
	CNS0095599	Silvery flower (diploied) 2	116.059
	CNS0095600	Silvery flower (diploied) 3	106.546
	CNS0095601	Golden flower (diploid) 1	62.128
	CNS0095602	Golden flower (diploid) 2	71.588
	CNS0095603	Golden flower (diploid) 3	74.423
	CNS0095604	Slightly white alabastrum(tetraploid) 1	155.377
	CNS0095605	Slightly white alabastrum(tetraploid) 2	91.309
	CNS0095606	Slightly white alabastrum(tetraploid) 3	323.377
	CNS0095607	Whole white alabastrum(tetraploid) 1	93.194
	CNS0095608	Whole white alabastrum(tetraploid) 2	119.120
	CNS0095609	Whole white alabastrum(tetraploid) 3	239.822
	CNS0095610	Silvery flower (tetraploid) 1	171.557
	CNS0095611	Silvery flower (tetraploid) 2	134.035
	CNS0095612	Silvery flower (tetraploid) 3	72.405
	CNS0095613	Golden flower (tetraploid) 1	71.176
	CNS0095614	Golden flower (tetraploid) 2	75.689
	CNS0095615	Golden flower (tetraploid) 3	36.602
CRA001975	CRR073297	Stem 1	116.075
	CRR073298	Stem 2	118.980
	CRR073299	Stem 3	68.792
	CRR073300	Leaf 1	231.267
	CRR073301	Leaf 2	254.651
	CRR073302	Leaf 3	205.706
	CRR073303	Juvenile bud 1	298.369
	CRR073304	Juvenile bud 2	193.640
	CRR073305	Juvenile bud 3	273.201
	CRR073306	Third green 1	26.583
	CRR073307	Third green 2	23.977
	CRR073308	Third green 3	42.443
	CRR073309	Second white 1	33.235
	CRR073310	Second white 2	30.952
	CRR073311	Second white 3	16.549
	CRR073312	Silver flowering 1	4.195
	CRR073313	Silver flowering 2	3.353
	CRR073314	Silver flowering 3	3.972
	CRR073315	Gold flowering 1	25.389
	CRR073316	Gold flowering 2	14.524
	CRR073317	Gold flowering 3	8.043
	CRR073318	Tawny withering 1	0.368
	CRR073319	Tawny withering 2	3.555
	CRR073320	Tawny withering 3	0.464