Gene detail

Detail information of GWHGAAZE015857

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN68941.1	1.4641E-148	hypothetical protein VITISV_028996 [Vitis vinifera]
trEMBL	tr\|F6HZN0\|F6HZN0_VITVI	5E-164	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60145.1}
TAIR10	AT5G07900.1	2E-76	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	60632494	60639600	+
GWHAAZE00000004	mRNA	60632494	60639600	+
GWHAAZE00000004	exon	60632494	60633278	+
GWHAAZE00000004	exon	60633460	60633518	+
GWHAAZE00000004	exon	60633595	60633643	+
GWHAAZE00000004	exon	60633773	60634035	+
GWHAAZE00000004	exon	60638606	60639600	+
GWHAAZE00000004	CDS	60632494	60633278	+
GWHAAZE00000004	CDS	60633460	60633518	+
GWHAAZE00000004	CDS	60633595	60633643	+
GWHAAZE00000004	CDS	60633773	60634035	+
GWHAAZE00000004	CDS	60638606	60639600	+

Transcript Sequence
>GWHTAAZE015873 ATGGTTAAAGGTCGCCCCACGATTCTTCTTTCAGATCCCAAGAAAACCCTAATCCCCAAGCTGGAGTTCTTTCGCTCCATAGGGTTATCAAGAACTGATATGCCAAGAATTGTCTCGTTGAATCCGTTTTTGTTAGGGAGCAGTTTAGAAAATCAGTTGATTCCTTGTCATAACTTCTTAAAAAATGTACTAGTTCTTGATGAAAATGTAGTTAAGATGTTAAAGCGGAATTCAAGGATACTTATTCATGATTTTGAGAAGAATATTGGTCCGAATATTAGTTCATTGAGTAGGGTTGGGGTTCCTAAATCGCTAATTTTGTTCATGTTGTTTCATTTTCCGTCTGTTGCTTGTCAAAATCACAAGAAGTTTAAGAAAGTGGTAGAGGAAGTAATTGGAATGGGATTTAATCCGTTGAGGTCTATGTTTGTTCAAGCTGTTCAAGTGATTTGTGGAATGACTAAAACAACGTGGGATCGTAAATGGGCAGCGTATAGGATGTGGGATTTGTCCGATGATGAGATTCTAATGGCGTTTAGATCGCACCCGGTGTGCATGAAATTGTCTGAGGAGAAAATTATGAGGGAAATGGATTTTCTTGTGAACAAAATGGGTTGGAAGGCTGTGAAAATCGCTAGGTGTCCGGCCGTACTTTTTTTCAATTTCGAAAATAGGATCGTTCCGAGGTGTAGAGCAATAAAAGTGTTGATATCGGAGGGAATTTTGAAGAAAGATATGAGCTTGGCTACCTTTTTGATGCCTTCGGAAAATGACTTCTTGGAAAGAATGTCTACTGCAGCACTGCTCTTGTTATCAACCCAAGATTTGCTATATATTGATGAAGATTGTCTTGCACAAGAAGCTGTAGCGTCTAAATTGGTTGCTGACGCTTGGGGTTGGACCTCTAATTTAGATGATATTAAGGGTATTTTTCAAAAGCATTTTGAAAATGTTTTTAAATCTAATTTTCTTGAGTTTATTGAACCAAAATTTCCCTCTTTTGCTACTGGATTGAACCCTCTCGAAAGTGATAGCCTGCTTACAGAAGTTACTGTTGAGGAAATCAAATTTATTCTCTGGAGAATGAACCCGAACAAAACTCCTGGACCTGATGGTCTAAGTTCAAATTTTTTTGCACAATACTGGGATATTTTAGAATCCAATTTCATCGCACTTGATAAAAACCCACAAAAAGCAGAGCGAGTTCTAACCCTTTTCAGAACCCATGGCTTCAGTGAAACCCAGATCTCAAGAGTGGTTAAAGTGCGCCCTACTATTCTTTTTTCAGATCCTAAGAAAACCCTAATTCCCAAGCTGGAGTTCTTTCGCTCCATAGGATTATCAAGAACCGATCTGCCAAGAATTGTGTCGTCTAATCCGGTTCTGTTAGGGAGGAGTTTAGCGAATCAGTTGATTCCTTGTCATAATTTCCTCAAAAATCTACTAATTCTAGATGAAAATGTTGTTAAGATGTTGAAGCGGGATTCGAGGATACTTCTTCATGATTTTGAGAATGTTACTGGTCCGAATATTAGTTCATTGAGTGAGATTGGAGTTCCTAAATCAGTAATTTCGTTCATGCTGTTTTGGTTTCCGACTACTGCTCATCAAAATCACGAGAAGTTTAAGAGGGCGGTTGAGGTTGTTATTGGAATGGGATTTAATCCGTTGAGGTCTATGTTCGTTCAAGCGGTTCAAGTTATTTGTGGAACGACTAAGATGACGTTGGATCGTAAATGGGCAGCTTATAGGAGTTGGGGTTTGTCTGATGACGAGATTCTAACGGCGTTTAGATCGCATCCGATGTGCATGAATTTGTCCGAGGAGAAAATTACGAGGGGAATGGATTTTTTTGTGAACAAAATGGGTTGGGAGGCTGTGAAAGTGGCTAGGTGTTCGGCCGTACTTTTTTACAATTTGGAAAATAGGATCATTCCGAGGTGTAGAGTGATAAAAGTTCTGATATCGGAGGGGATTTTGAAGAAAGATGCAAGCTTGAGTACCTTTCTGATGCCTTCGGAAAATAAATTCTTGCAGAAGTTTGTGAGCAAATACGAAGACAAAGTTCCCAAGCTGCTAAATGTTTATCAAGGGAAGACGGTTCATTTGAAAAAGGGACTTCGATCCAAGGACCAACATGTGGGTAAATGA

Network for GWHGAAZE015857

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	2	137	5.60E-15
PF02536.15	mTERF	168	260	6.20E-16
PF02536.15	mTERF	403	555	1.10E-18
PF02536.15	mTERF	476	678	1.30E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.834
	SRR3591706	second leaf	3.687
	SRR3591707	mature leaf	2.077
	SRR3591708	Shoot apex	5.938
	SRR3591709	Stem	2.843
	SRR3591710	White floral bud	3.205
	SRR3591711	White flower	4.347
	SRR3591712	Green floral bud	4.540
	SRR3591713	Yellow flower	2.224
SRP173429	SRR8316895	Juvenile bud stage	5.566
	SRR8316896	Juvenile bud stage	5.780
	SRR8316897	Juvenile bud stage	1.219
	SRR8316894	Third green stage	3.027
	SRR8316900	Third green stage	6.233
	SRR8316901	Third green stage	5.318
	SRR8316898	Complete white stage	1.993
	SRR8316899	Complete white stage	8.857
	SRR8316903	Complete white stage	2.674
	SRR8316902	Silver flowering stage	1.643
	SRR8316904	Silver flowering stage	2.910
	SRR8316905	Silver flowering stage	1.190
	SRR8316906	Gold flowering stage	2.681
	SRR8316907	Gold flowering stage	3.281
	SRR8316908	Gold flowering stage	2.026
SRP132670	SRR6706286	Control	3.582
	SRR6706287	Light intensity 50%	4.294
	SRR6706288	Light intensity 20%	4.869
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.030
	CNS0095593	Slightly white alabastrum(diploid) 2	4.393
	CNS0095594	Slightly white alabastrum(diploid) 3	3.607
	CNS0095595	Whole white alabastrum(diploid) 2	2.906
	CNS0095596	Whole white alabastrum(diploid) 3	2.976
	CNS0095597	Whole white alabastrum(diploid) 4	3.235
	CNS0095598	Silvery flower (diploied) 1	5.764
	CNS0095599	Silvery flower (diploied) 2	2.932
	CNS0095600	Silvery flower (diploied) 3	2.095
	CNS0095601	Golden flower (diploid) 1	3.919
	CNS0095602	Golden flower (diploid) 2	2.512
	CNS0095603	Golden flower (diploid) 3	2.780
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.373
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.760
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.582
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.241
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.376
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.834
	CNS0095610	Silvery flower (tetraploid) 1	2.623
	CNS0095611	Silvery flower (tetraploid) 2	2.568
	CNS0095612	Silvery flower (tetraploid) 3	2.290
	CNS0095613	Golden flower (tetraploid) 1	0.778
	CNS0095614	Golden flower (tetraploid) 2	1.585
	CNS0095615	Golden flower (tetraploid) 3	0.820
CRA001975	CRR073297	Stem 1	3.925
	CRR073298	Stem 2	4.782
	CRR073299	Stem 3	2.087
	CRR073300	Leaf 1	4.249
	CRR073301	Leaf 2	3.600
	CRR073302	Leaf 3	1.595
	CRR073303	Juvenile bud 1	2.379
	CRR073304	Juvenile bud 2	0.953
	CRR073305	Juvenile bud 3	1.674
	CRR073306	Third green 1	0.161
	CRR073307	Third green 2	0.037
	CRR073308	Third green 3	0.177
	CRR073309	Second white 1	0.126
	CRR073310	Second white 2	0.163
	CRR073311	Second white 3	0.464
	CRR073312	Silver flowering 1	0.084
	CRR073313	Silver flowering 2	0.164
	CRR073314	Silver flowering 3	0.071
	CRR073315	Gold flowering 1	1.080
	CRR073316	Gold flowering 2	2.127
	CRR073317	Gold flowering 3	0.702
	CRR073318	Tawny withering 1	1.822
	CRR073319	Tawny withering 2	1.240
	CRR073320	Tawny withering 3	1.339