Gene detail

Detail information of GWHGAAZE015855

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271836.1	8.76957E-95	PREDICTED: uncharacterized protein LOC100241175 [Vitis vinifera]
trEMBL	tr\|D7U335\|D7U335_VITVI	7E-93	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI37152.3}
TAIR10	AT5G07900.1	2E-66	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	60569458	60570327	+
GWHAAZE00000004	mRNA	60569458	60570327	+
GWHAAZE00000004	exon	60569458	60570327	+
GWHAAZE00000004	CDS	60569458	60570327	+

Transcript Sequence
>GWHTAAZE015871 ATGGTTAGAATACGCCCCAGGATTCTTTCTTCAGATCCCAAGAAAAAACTTATTCCCAAGCTGGAGTTCTTTCGCTCCATAGGGTTATCAAGAACCGATCTGCCAAGAATTGTCTCGTTGAATCCTTCTTTGTTTGGGAGGAGTTTAGAGAATCAGTTGATTCCTTGTCATAACTTCCTCAAAAATGTACTAGTTCTTGATGAAAATGTTGTTAAGATGTTAAAGCGGGATTCGAGGATACTTCTTTATGATTTTGAGAAGAATATGGGTCCGAATATTAGTTCATTGAGTGGGGTTGGGGTTCCTAAATCGCTAATTTCATCCTTCTTGTTTCGGTGTCCATCTGTTGCTTCTCGAAATCACGAGAGGTTTAAGAAAGCGGTAGAGGAAGTTATTGGAATGGGATTTAATCCTTTGAGGACAATGTTTGTTCAAGCAGTTCAAGTGATTTGTGAAATGACTAAAACGACATGGGATCGTAAGTGGGTGGCTTTTAGCAGGTGGGGTTTGTCCAATGACGAGATTCGAATGGCGTTTAAATCGCATCCATTGTGCATGAATTTGTCCGAGGAGAAAATTATGAGGGAAATGGATTTTCTTATGAACAAAATGGGTTGGGAGGCTGTGAAAATTGCTAGGTGTCCGGCCGTACTTTTTTTCAATTTGGAAAATAGGATCATTCCGAGGTGTAGAGTAATAAAAGTGTTGATATTGGAGGGAATTTTGAAGAAAGATACGAGCTTGAGTACCTTTTTGAAGCCTTCGGAAAATCAATTCTTGGAACGGTTTGTGAGGAACTATGAAGGCAAAGTTCCCGAGCTGATAAATGTTTATCGAGGGAAGACGGTTCATTTTATAACAGGAGTTTGA

Network for GWHGAAZE015855

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	2	260	3.70E-35

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.901
	SRR3591706	second leaf	1.500
	SRR3591707	mature leaf	0.965
	SRR3591708	Shoot apex	3.101
	SRR3591709	Stem	1.554
	SRR3591710	White floral bud	2.874
	SRR3591711	White flower	2.318
	SRR3591712	Green floral bud	3.606
	SRR3591713	Yellow flower	0.364
SRP173429	SRR8316895	Juvenile bud stage	0.378
	SRR8316896	Juvenile bud stage	0.847
	SRR8316897	Juvenile bud stage	0.031
	SRR8316894	Third green stage	0.696
	SRR8316900	Third green stage	2.351
	SRR8316901	Third green stage	1.549
	SRR8316898	Complete white stage	0.507
	SRR8316899	Complete white stage	1.739
	SRR8316903	Complete white stage	1.012
	SRR8316902	Silver flowering stage	0.441
	SRR8316904	Silver flowering stage	0.711
	SRR8316905	Silver flowering stage	0.201
	SRR8316906	Gold flowering stage	0.880
	SRR8316907	Gold flowering stage	0.312
	SRR8316908	Gold flowering stage	0.265
SRP132670	SRR6706286	Control	0.827
	SRR6706287	Light intensity 50%	0.850
	SRR6706288	Light intensity 20%	1.081
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.180
	CNS0095593	Slightly white alabastrum(diploid) 2	0.861
	CNS0095594	Slightly white alabastrum(diploid) 3	0.820
	CNS0095595	Whole white alabastrum(diploid) 2	1.100
	CNS0095596	Whole white alabastrum(diploid) 3	0.307
	CNS0095597	Whole white alabastrum(diploid) 4	0.234
	CNS0095598	Silvery flower (diploied) 1	1.006
	CNS0095599	Silvery flower (diploied) 2	0.171
	CNS0095600	Silvery flower (diploied) 3	1.072
	CNS0095601	Golden flower (diploid) 1	0.581
	CNS0095602	Golden flower (diploid) 2	0.646
	CNS0095603	Golden flower (diploid) 3	0.593
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.163
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.223
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.315
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.042
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.360
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.073
	CNS0095610	Silvery flower (tetraploid) 1	0.224
	CNS0095611	Silvery flower (tetraploid) 2	0.241
	CNS0095612	Silvery flower (tetraploid) 3	0.032
	CNS0095613	Golden flower (tetraploid) 1	0.033
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.227
	CRR073298	Stem 2	0.812
	CRR073299	Stem 3	0.171
	CRR073300	Leaf 1	0.911
	CRR073301	Leaf 2	0.579
	CRR073302	Leaf 3	0.242
	CRR073303	Juvenile bud 1	0.302
	CRR073304	Juvenile bud 2	0.025
	CRR073305	Juvenile bud 3	0.515
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.021
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.318
	CRR073310	Second white 2	0.493
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.023
	CRR073313	Silver flowering 2	0.061
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.359
	CRR073316	Gold flowering 2	0.018
	CRR073317	Gold flowering 3	0.046
	CRR073318	Tawny withering 1	0.617
	CRR073319	Tawny withering 2	0.363
	CRR073320	Tawny withering 3	0.749