Detail information of GWHGAAZE015835


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007221780.11.4549E-159hypothetical protein PRUPE_ppa007504mg [Prunus persica]
Swissprottr|Q9SL92|HCS1_ARATH2E-149Biotin--[acetyl-CoA-carboxylase] ligase (Precursor)
trEMBLtr|M5XAL0|M5XAL0_PRUPE5E-160Uncharacterized protein {ECO:0000313|EMBL:EMJ22979.1}
TAIR10AT2G25710.22E-120holocarboxylase synthase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene5927135259282771-
GWHAAZE00000004mRNA5927135259282771-
GWHAAZE00000004exon5928250359282771-
GWHAAZE00000004exon5928236059282421-
GWHAAZE00000004exon5928212359282271-
GWHAAZE00000004exon5927577759275897-
GWHAAZE00000004exon5927550259275657-
GWHAAZE00000004exon5927500159275046-
GWHAAZE00000004exon5927316759273242-
GWHAAZE00000004exon5927135259271435-
GWHAAZE00000004CDS5928250359282771-
GWHAAZE00000004CDS5928236059282421-
GWHAAZE00000004CDS5928212359282271-
GWHAAZE00000004CDS5927577759275897-
GWHAAZE00000004CDS5927550259275657-
GWHAAZE00000004CDS5927500159275046-
GWHAAZE00000004CDS5927316759273242-
GWHAAZE00000004CDS5927135259271435-
Transcript Sequence

Network for GWHGAAZE015835

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03099.20BPL_LplA_LipB792052.20E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01942HLCS Metabolic pathways map01100
Biotin metabolismmap00780

Gene Ontology

GO term OntologyName
GO:0006464biological_processcellular protein modification process
GO:0004077molecular_functionbiotin-[acetyl-CoA-carboxylase] ligase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.824
SRR3591706second leaf5.542
SRR3591707mature leaf3.449
SRR3591708Shoot apex7.868
SRR3591709Stem10.152
SRR3591710White floral bud11.459
SRR3591711White flower12.853
SRR3591712Green floral bud13.439
SRR3591713Yellow flower14.663
SRP173429 SRR8316895Juvenile bud stage 7.664
SRR8316896Juvenile bud stage 12.377
SRR8316897Juvenile bud stage 5.539
SRR8316894Third green stage 4.886
SRR8316900Third green stage 16.230
SRR8316901Third green stage 14.727
SRR8316898Complete white stage 8.851
SRR8316899Complete white stage 16.222
SRR8316903Complete white stage 12.172
SRR8316902Silver flowering stage8.629
SRR8316904Silver flowering stage12.778
SRR8316905Silver flowering stage6.385
SRR8316906Gold flowering stage 19.430
SRR8316907Gold flowering stage 15.042
SRR8316908Gold flowering stage 15.743
SRP132670SRR6706286Control6.129
SRR6706287Light intensity 50%6.622
SRR6706288Light intensity 20%7.330
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.340
CNS0095593Slightly white alabastrum(diploid) 29.465
CNS0095594Slightly white alabastrum(diploid) 38.756
CNS0095595Whole white alabastrum(diploid) 29.826
CNS0095596Whole white alabastrum(diploid) 38.824
CNS0095597Whole white alabastrum(diploid) 48.286
CNS0095598Silvery flower (diploied) 17.980
CNS0095599Silvery flower (diploied) 25.598
CNS0095600Silvery flower (diploied) 318.230
CNS0095601Golden flower (diploid) 17.600
CNS0095602Golden flower (diploid) 213.602
CNS0095603Golden flower (diploid) 314.458
CNS0095604Slightly white alabastrum(tetraploid) 19.572
CNS0095605Slightly white alabastrum(tetraploid) 27.368
CNS0095606Slightly white alabastrum(tetraploid) 312.578
CNS0095607Whole white alabastrum(tetraploid) 18.168
CNS0095608Whole white alabastrum(tetraploid) 28.134
CNS0095609Whole white alabastrum(tetraploid) 314.956
CNS0095610Silvery flower (tetraploid) 114.565
CNS0095611Silvery flower (tetraploid) 215.018
CNS0095612Silvery flower (tetraploid) 321.229
CNS0095613Golden flower (tetraploid) 111.913
CNS0095614Golden flower (tetraploid) 212.571
CNS0095615Golden flower (tetraploid) 314.268
CRA001975CRR073297Stem 16.027
CRR073298Stem 28.607
CRR073299Stem 36.359
CRR073300Leaf 112.026
CRR073301Leaf 29.011
CRR073302Leaf 39.155
CRR073303Juvenile bud 110.065
CRR073304Juvenile bud 27.878
CRR073305Juvenile bud 37.883
CRR073306Third green 16.839
CRR073307Third green 26.438
CRR073308Third green 36.894
CRR073309Second white 110.135
CRR073310Second white 210.603
CRR073311Second white 312.755
CRR073312Silver flowering 114.297
CRR073313Silver flowering 210.306
CRR073314Silver flowering 313.778
CRR073315Gold flowering 110.222
CRR073316Gold flowering 211.077
CRR073317Gold flowering 36.746
CRR073318Tawny withering 15.770
CRR073319Tawny withering 21.870
CRR073320Tawny withering 35.053