Gene detail

Detail information of GWHGAAZE015654

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011097420.1	PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D [Sesamum indicum]
Swissprot	tr\|Q9XID0\|FAB1D_ARATH	Putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D
trEMBL	tr\|A0A068VF25\|A0A068VF25_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_484 {ECO:0000313\|EMBL:CDP19435.1}
TAIR10	AT3G14270.1	phosphatidylinositol-4-phosphate 5-kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	51865226	51876846	-
GWHAAZE00000004	mRNA	51865226	51876846	-
GWHAAZE00000004	exon	51876807	51876846	-
GWHAAZE00000004	exon	51876593	51876626	-
GWHAAZE00000004	exon	51875355	51876002	-
GWHAAZE00000004	exon	51874305	51874449	-
GWHAAZE00000004	exon	51873114	51873455	-
GWHAAZE00000004	exon	51871807	51872640	-
GWHAAZE00000004	exon	51870755	51871089	-
GWHAAZE00000004	exon	51870019	51870145	-
GWHAAZE00000004	exon	51869769	51869924	-
GWHAAZE00000004	exon	51867720	51869009	-
GWHAAZE00000004	exon	51866760	51867020	-
GWHAAZE00000004	exon	51865226	51865540	-
GWHAAZE00000004	CDS	51876807	51876846	-
GWHAAZE00000004	CDS	51876593	51876626	-
GWHAAZE00000004	CDS	51875355	51876002	-
GWHAAZE00000004	CDS	51874305	51874449	-
GWHAAZE00000004	CDS	51873114	51873455	-
GWHAAZE00000004	CDS	51871807	51872640	-
GWHAAZE00000004	CDS	51870755	51871089	-
GWHAAZE00000004	CDS	51870019	51870145	-
GWHAAZE00000004	CDS	51869769	51869924	-
GWHAAZE00000004	CDS	51867720	51869009	-
GWHAAZE00000004	CDS	51866760	51867020	-
GWHAAZE00000004	CDS	51865226	51865540	-

Transcript Sequence
>GWHTAAZE015670 ATGGATAAAAAGGAGAATTTTAATCCTACAAGATTAAATGGTGATTTCTCAGTTGATGCATCCTCATATTGCAGGGGTTATCAAGACGAAGGAAGCATAGACAATGGCCAAGAAGATCCAATTTGCGACTTGAGTTTACCGCCTCATGCGAATGGATTTCACAAATCCAACGTTGTGGTGAAAAGGAACCACGAGGAAAGTAATAATGGCAAATGCCAACCCGAATATAATGGCATTGAAAGAGCTATTTTACCCATTGAAGAGGAAGATGAAATTGGAACATATGATTCTCATAACGAAGAAATGGACGCCAATTTTTGGTTACCTCCAGAACCGGAAGACGAAGAGAATGACTTGGAGGGTAGTGTGGCTAACTACGAAGACGATGACGATGAATTTGATAATGGAATGAAATGGGGCAAACCGAGTTCTTTAAGTAGCTTTGGAGATGAAGGAAGTGGTAGCTATAGGTTTAAAGAAGATAAAGAGAAGGCCATGAACGAGGTGATGAATGGAAAGTTTAAGGCCCTTGTGGGTCAACTTCTTAAATCCGTGGACGTTTCTTGTGGAGGAAAAGGTGATGATAATTGGGTCGATGTAGTTACTTCTTTATCATGGGAAGCTGCTTCATTTGTCAAGCCCGATACTGTTGAGGGCAAGGCAATGGATCCTGATGGATATGTGAAGATAAAATGTATTGCTACTGGTTCGAGAACTCAAAGTCAGGTATTCAAAGGATTGGTTTTCAAGAAGCATGCTGCTCACAAGCACATGCCGACAAAGTACACCAACCCTAGATTGTTGTTGATCCAAGGCGCTCTTGATCTCTCTTCGAGTGGATTGTCATCCTTCGAAGCAATGAAGCAGGAGAAGGATAGTCTAAATTCCATTATTGATCTGATAGAAAGGTGTCACCCAAACGTGGTCTTAGTGGAGAAAACTGTTTCTCGTGATATACAAGAGTCTATTCTTTCAAAAGGGATGACACTAGTTTTCGATATGAAACTCCATCGCTTAGAAAGAGTTGCTCGTTGCACTGGCTCACCGATTCTTTCCACTGATTTGCCAATTGGCCAAAAGCTTAAGCAGTGCGACTCTTTTCATATTGAAAAATTTGTGGAGGAACATGCTGCTTTTGGTGAAGGTGGAAAAAGACCGAGCAAAACTTTAATGTTCCTTGAAGGTTGTCCTACACGCCGGGGTTGTACTATTTTGTTGAAGGGAAGTCATAGTGACGAATTGAAGAGGATTAAATGTGTAATTCGCTATGCCGTTCTCATGGCATATCATTTAATGCTTGAAACTTCTTTCCTTCTAGATCAAAGGGCTATGTTCTCTACCATTCTTCTTAATGGAGTGGTGAGCTCTACACTCACTGATCAACCAACATCCAACGGCTCCGGTGATCCCAACGTTCATCGTGTTGAGGAGTCCATTGCCGAAAATGATCTGTCAAGTACAATAGACATTCCCATTTCCAATGGATTCCATGATAAAGGGACACACAATATGGGAATAGACATTCCCATTTCCAATGGATTCCATGATGAAGGGACCCACAATATGGGATTTGAAGAAGAGTCTTTGTACAAGCCTTACAACCCAGTCATTTTCTCGGGGTTTTCATCACTATCTGCCTCTCTAAAGAAAGCTATTGGCGACGGTTTTCCTCTTTTCTCTAACTTCAACGGAACAGACACAGAGGGTCATAACGATACTTCCGTTGACATTTCGAGCTTGCCCGAGGCAATTGATAATTGTGATACTGAAACAAAAGGCTCTTTTGACGAAGAAAAGGCACTTAATAACGAAAAACAGCAATTTTCATCTCTAGATACACAAAAATCTTATGATAATGAAGAGCAAGTGAACAAGGATGAGATTCGTACAGTGATGGATTCGGATAGTATTTTGGTATTGTTGTCTCGTCGGAATGCTTCAAGAGGGACTATTTGTGAGCAAAGCCATTTTTCTCATATCAAGTTCTACCGGAATTTTGACGTTCCCCTTGGCAAGTTTCTGCGGGATAACTTACTTAACCAGAGGCTCCTTTGCAGCACGTGTGGTGAACCACCAGAAGCCCATTTTTACTATTATGCACATCACAATAAGCAACTAACGATTAAGGTTAAACGTCTTAATATGGAAAAGCGGTTGCCTGGTGAAACTGAAGGGAAGCTTTGGATGTGGAGTTGCTGTGGTAAATGTAAACACCACAACGGAAACTCAAAATCTACAAGAAGAGTATTGATATCCGCAGCAGCACGTGGGTTTTCGTTCGGGAAGTTTTTAGAACTGGGGTTATCGAGCCACTCTTCATTTAGAAGACCATCTAGTTGTGGGCACTTCCTTCACAAGGACTTCAATTATTTCTTTGGATTAGGCCCAATGGTTGCAATGTTCAGATACTCTGCGGTTGCAACTTATACTGTATCTCTGCCACCTCAAAGACTGGATTTTCGCTATTCAATTGGAGGGGAGTTTCTTAGTGAAGATTTTGGAAATGTGCAGGTGAAAGGAGATTTAATGTTCCTTGAGTTGGAGAGATCATTGAAGGAGATTAGATCACGGTTTGCAGGCTCAACATTGAACCTTGAAGGATCACTGAAGGAATTCTCTGATATTGAGGAAATGTTGAAGAATGAAAGAAATCTATTCGAGGTAAATATTGAGAACATCATGAAGAATGGGAGTCCCGATGAGGCTGTGTACAAACTCGTCTGCTTGAACCAAGTACAATGGGAGCTTCTGCTTGAATCCTGCATCTGGGATCAGCGTCTCCATTCACTCCTCTCATCCAATTTTACATATGCTGACATTGGAACCAATGTTAAAGCACAAACCTATTTGAACGAAGATAATCTCGTTGGAGAAGACACTAGTGGGGCTGCAGAAATCTCAACCAAAAGTGGTAATAAAGTTTGTGAAAATACCACCGACCCCGAAACGGGATTGGAGACATCTCCCCAGGAAAGTGATTCTACTTACATAGAAATCCCAATTGAAGGAGAAAATGAATCATTTGATGATCAGAATTGTACCGAAGATAATCATAATGTTCTTTCCTCTGTTAAATCTGGTAAAATCGTTCCTATTACTAGATATTATAGTGTAAGTGGGGGTAAATCTCTTTTTCCAACTCTATCCAACGTAGAAAACTCAAAGGGATGGATTTGGATTCCTTTCCCGGAGATTCGATCTGAGTACTTGAAGGAGCTCCACAGAGGCTATGCTCCGAAATTTGAAATCACCAACCTGCAAGGCCGCGGATCGAGGGTCCATGATATGATCATTGATGAGGGCTCACGTTTGCACATTCCTCTGGGCGATGAAGACTATATTGTATCTGATTATGAGGATGAATTATCGAGCGTAATTGCTTGTGCTCTTGCCTTGTTGAAGGATACACCAATCCCGGCTGAGGATAACAGTGATAACTCACATGGGTTGGCTCGAATATCTTCTATGGCATCCCCTCATTGGTCCTCATTTGGTTCTTTGGACTCGGAGGGAATCGAGTCTTTAGCCAGCATTTCTTCAGAGGATTCTCACTTCTCGAATATTATTGGTTCTTATTTGTTGGATTCTTTGGTTTCTTTGAGGTCTCCTCACCCGAAAGTTCATATGGGGTTGAGGAAATACCCTGGGAAGGGAAAATATTATGTTGCTTGTTTATATGCAAGCGAGTTTGAAGATTTGAGGAGCCGGTGTTGTTCGTCAGAATTGGCATATATTGCTTCACTAAGCCGTTGTAAAAGCTGGGATGCTAAAGGCGGGAAAAGCAAATCCTTCTTTGCTAAAACCCGTGATGATCGGTTCATTATAAAGGAAATCAAGAGGATAGAATATGATTCCTTCATGACTTTTGCTTCGGATTATTTCAAGTATATGAAGCAATGCCATGACCTTGGGAACCAGACTTGCCTTGCGAAAATTCTTGGGATTTATCAGGTTAGAGTAACAAAGAATGGGAAAGAAGCAAGACATGATCTGATGGTGATGGAAAATCTTACATTTGGTCGAAATGTTAGTCGGCAGTACGATCTTAAAGGTGCTTTACATGCTCGGTTCAATTCAGCTGCTGCGGATGGGCAAGATGTTCTTTTGGATCAAAATTTCGTCAATGACATGAATGTCTCTCCGTTGTACCTTAGTAGGACAGCAAAGCGGAATTTGCAACGGGCTGTGTGGAATGATACTACCTTCCTCAATTCGATCAATGTGATGGACTATTCCCTGCTAGTGGGAGTGGACGGTCACCGGCGAGAACTCGTTTGCGGCATAATCGACTATCTCCGACAGTACACATGGGACAAACAGCTCGAGAATTGGGTCAAATCCTCCCTCGTCGTCCCTAAGAACCAGAGGCCCACTGTCATCTCTCCCAAAGAGTACAAACAAAGGTTTAGAAAATTCATCACCGCCCATTTCTTGAGTGTCCCTGATAACTGGTGCTCTCGATCCTCAACCCCTCAAGTTGGCACGATAACCGATGACGACGATGAAAAAATCTCAAGAGAAAAATAA

Network for GWHGAAZE015654

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00118.25	Cpn60_TCP1	179	431	1.70E-26
PF01504.19	PIP5K	1257	1419	2.20E-35
PF01504.19	PIP5K	1424	1474	1.90E-09

Protein Sequence

>GWHPAAZE015662
MDKKENFNPTRLNGDFSVDASSYCRGYQDEGSIDNGQEDPICDLSLPPHANGFHKSNVVVKRNHEESNNGKCQPEYNGIERAILPIEEEDEIGTYDSHNEEMDANFWLPPEPEDEENDLEGSVANYEDDDDEFDNGMKWGKPSSLSSFGDEGSGSYRFKEDKEKAMNEVMNGKFKALVGQLLKSVDVSCGGKGDDNWVDVVTSLSWEAASFVKPDTVEGKAMDPDGYVKIKCIATGSRTQSQVFKGLVFKKHAAHKHMPTKYTNPRLLLIQGALDLSSSGLSSFEAMKQEKDSLNSIIDLIERCHPNVVLVEKTVSRDIQESILSKGMTLVFDMKLHRLERVARCTGSPILSTDLPIGQKLKQCDSFHIEKFVEEHAAFGEGGKRPSKTLMFLEGCPTRRGCTILLKGSHSDELKRIKCVIRYAVLMAYHLMLETSFLLDQRAMFSTILLNGVVSSTLTDQPTSNGSGDPNVHRVEESIAENDLSSTIDIPISNGFHDKGTHNMGIDIPISNGFHDEGTHNMGFEEESLYKPYNPVIFSGFSSLSASLKKAIGDGFPLFSNFNGTDTEGHNDTSVDISSLPEAIDNCDTETKGSFDEEKALNNEKQQFSSLDTQKSYDNEEQVNKDEIRTVMDSDSILVLLSRRNASRGTICEQSHFSHIKFYRNFDVPLGKFLRDNLLNQRLLCSTCGEPPEAHFYYYAHHNKQLTIKVKRLNMEKRLPGETEGKLWMWSCCGKCKHHNGNSKSTRRVLISAAARGFSFGKFLELGLSSHSSFRRPSSCGHFLHKDFNYFFGLGPMVAMFRYSAVATYTVSLPPQRLDFRYSIGGEFLSEDFGNVQVKGDLMFLELERSLKEIRSRFAGSTLNLEGSLKEFSDIEEMLKNERNLFEVNIENIMKNGSPDEAVYKLVCLNQVQWELLLESCIWDQRLHSLLSSNFTYADIGTNVKAQTYLNEDNLVGEDTSGAAEISTKSGNKVCENTTDPETGLETSPQESDSTYIEIPIEGENESFDDQNCTEDNHNVLSSVKSGKIVPITRYYSVSGGKSLFPTLSNVENSKGWIWIPFPEIRSEYLKELHRGYAPKFEITNLQGRGSRVHDMIIDEGSRLHIPLGDEDYIVSDYEDELSSVIACALALLKDTPIPAEDNSDNSHGLARISSMASPHWSSFGSLDSEGIESLASISSEDSHFSNIIGSYLLDSLVSLRSPHPKVHMGLRKYPGKGKYYVACLYASEFEDLRSRCCSSELAYIASLSRCKSWDAKGGKSKSFFAKTRDDRFIIKEIKRIEYDSFMTFASDYFKYMKQCHDLGNQTCLAKILGIYQVRVTKNGKEARHDLMVMENLTFGRNVSRQYDLKGALHARFNSAAADGQDVLLDQNFVNDMNVSPLYLSRTAKRNLQRAVWNDTTFLNSINVMDYSLLVGVDGHRRELVCGIIDYLRQYTWDKQLENWVKSSLVVPKNQRPTVISPKEYKQRFRKFITAHFLSVPDNWCSRSSTPQVGTITDDDDEKISREK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00921	PIKFYVE, FAB1	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Phosphatidylinositol signaling system	map04070
		Phagosome	map04145
		Regulation of actin cytoskeleton	map04810

Gene Ontology

GO term	Ontology	Name
GO:0046488	biological_process	phosphatidylinositol metabolic process
GO:0005524	molecular_function	ATP binding
GO:0016307	molecular_function	phosphatidylinositol phosphate kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.678
	SRR3591706	second leaf	7.704
	SRR3591707	mature leaf	8.074
	SRR3591708	Shoot apex	8.886
	SRR3591709	Stem	19.638
	SRR3591710	White floral bud	15.103
	SRR3591711	White flower	16.268
	SRR3591712	Green floral bud	16.314
	SRR3591713	Yellow flower	13.813
SRP173429	SRR8316895	Juvenile bud stage	9.693
	SRR8316896	Juvenile bud stage	11.681
	SRR8316897	Juvenile bud stage	5.546
	SRR8316894	Third green stage	5.094
	SRR8316900	Third green stage	11.378
	SRR8316901	Third green stage	10.383
	SRR8316898	Complete white stage	4.986
	SRR8316899	Complete white stage	14.469
	SRR8316903	Complete white stage	9.147
	SRR8316902	Silver flowering stage	7.771
	SRR8316904	Silver flowering stage	10.469
	SRR8316905	Silver flowering stage	4.208
	SRR8316906	Gold flowering stage	17.131
	SRR8316907	Gold flowering stage	16.708
	SRR8316908	Gold flowering stage	16.238
SRP132670	SRR6706286	Control	11.943
	SRR6706287	Light intensity 50%	12.486
	SRR6706288	Light intensity 20%	13.644
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.532
	CNS0095593	Slightly white alabastrum(diploid) 2	6.145
	CNS0095594	Slightly white alabastrum(diploid) 3	6.655
	CNS0095595	Whole white alabastrum(diploid) 2	6.614
	CNS0095596	Whole white alabastrum(diploid) 3	6.359
	CNS0095597	Whole white alabastrum(diploid) 4	7.664
	CNS0095598	Silvery flower (diploied) 1	9.411
	CNS0095599	Silvery flower (diploied) 2	6.107
	CNS0095600	Silvery flower (diploied) 3	18.220
	CNS0095601	Golden flower (diploid) 1	7.170
	CNS0095602	Golden flower (diploid) 2	20.963
	CNS0095603	Golden flower (diploid) 3	19.263
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.673
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.124
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.856
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.621
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.622
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.110
	CNS0095610	Silvery flower (tetraploid) 1	24.023
	CNS0095611	Silvery flower (tetraploid) 2	20.826
	CNS0095612	Silvery flower (tetraploid) 3	22.176
	CNS0095613	Golden flower (tetraploid) 1	10.729
	CNS0095614	Golden flower (tetraploid) 2	19.097
	CNS0095615	Golden flower (tetraploid) 3	15.861
CRA001975	CRR073297	Stem 1	15.710
	CRR073298	Stem 2	13.575
	CRR073299	Stem 3	11.062
	CRR073300	Leaf 1	14.570
	CRR073301	Leaf 2	11.801
	CRR073302	Leaf 3	8.835
	CRR073303	Juvenile bud 1	10.740
	CRR073304	Juvenile bud 2	7.938
	CRR073305	Juvenile bud 3	13.251
	CRR073306	Third green 1	6.319
	CRR073307	Third green 2	4.242
	CRR073308	Third green 3	7.027
	CRR073309	Second white 1	6.650
	CRR073310	Second white 2	9.542
	CRR073311	Second white 3	9.680
	CRR073312	Silver flowering 1	12.366
	CRR073313	Silver flowering 2	9.210
	CRR073314	Silver flowering 3	10.940
	CRR073315	Gold flowering 1	4.458
	CRR073316	Gold flowering 2	7.169
	CRR073317	Gold flowering 3	2.669
	CRR073318	Tawny withering 1	11.442
	CRR073319	Tawny withering 2	9.324
	CRR073320	Tawny withering 3	7.106