Gene detail

Detail information of GWHGAAZE015638

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP21206.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	1E-130	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A0A068VKJ5\|A0A068VKJ5_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2795 {ECO:0000313\|EMBL:CDP21206.1}
TAIR10	AT4G08850.1	3E-107	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	51402801	51405048	-
GWHAAZE00000004	mRNA	51402801	51405048	-
GWHAAZE00000004	exon	51402801	51403156	-
GWHAAZE00000004	exon	51403320	51405048	-
GWHAAZE00000004	CDS	51403320	51405048	-
GWHAAZE00000004	CDS	51402801	51403156	-

Transcript Sequence
>GWHTAAZE015654 ATGGCTTCCGCTATTTGCATCAATTATTTTTTGGCACTAGTACTACTACAGGCTCTATGGTTGGCAGGTATAACTAAAGTTTTAGCTGTAACGTCGGGTACTGCTAACAATAATAATAATTCCTCACAACCACCTTGGTTAAAAAGAGACGTTGAAGTTGTAGCGGGTGGCCACCGGAAGGCGCATGTTGAAAATGTGAACACTCCTACGCATCATTGTAACTGGGAAGGCATCGGTTGCAATGAGGCAGGAAGTGTAACTTCAATTAGCCACCTTCAAGATTCATTTTATGCTGGAGGTGATTTGGAGGTGCTCAACTATACTTACTTCAAAGACATTGAAAGTTTTGATGTTGACCGTCGTGGGCTTAAAGGAACCATCCCATACGAAATCGGCATGCTTTCCAAACTGACCTACCTTTCTCTTGCTAACAATTTTCTCTCAGGTGAGCTACCTCTCTCACTGTCTAACCTCACTAACCTAACACTGCTCGACGTTTCACATAATTCTATCAATGGCTCCATACCATTTGAAGAATTAGGGAAATTAAAGAATTTGAATGTTTTGATCCTTAGTGGCAACTTATTCTCTGGTCGAATCCCTTCTTCTATTGGTTTCTTGAACCACTTAACCGACTTAGACCTTTCTGAGAATCAACTCACAGGGTTCCTTCCGCTAGAAGTAAGGAATCTCAGTACTTTGAATTCCTTGAACCTCCAGAAGAACAACCTTCTGGGTAGTATACCATCAGAGTTGGGACTTTTGACTAATTTGAGACATCTAGACCTTTCTTCCAATCATTTTAACGGCACGATTCCTGTTAATCTTTTACATTTGTCAAACTTAAACCACTTTGATCTCTCTTCCAATAATCTTGTTGGCCCTGTCCCCTCTAGGCTTTGGAAATTGTGCTCTAATGCAAATATTTACTTGTTGGGCAATGACCTGGAGGGCAACCTTAGCTGTGACTTTGAAGTGAAGGACAACAAGAACAAGAGTACTAGAGTCAAGCACTTTTTCCTCATTTTTATTCTTCCGGCCACAATTTCATTTTTGTTGGTGATCATCCTTGGCTATAAACCCTTTTCTTGGCTTAACGCTATAAGGAATAAAAGTGGGTCAGTAACAACAAAGCACGGAAATTTGTTCTCCATATGGAATTATGATGGGACAATTGCATACGAAGACATGATCACATCAACAAATGACTTTGATATCACTTACTGCATCGGCACTGGCGGTTATGGCAGTGTCTACAGGGCTCAACTACCCGGTGGCCAAGTAGTTGCCTTAAAGAAACTTCATCGTTTTGAAGCCGAGGATCCAGCTTTCGACAAGAGCTTCAAGAATGAGGTTCAAGTGTTATCAAATATAAGGCATAGAAATATTGTGAAGCTTTATGGGTTTTGTTTGCACAATAGATGCATGTTCCTAGTTTATGAATACATTGAAAACGGAAGCTTATTCTATGCCCTCAGAGTCGATTCCATGGCTGTCGAATTGGACTGGACTGAAAGGGTGAACATCGTTAAAGACATAGCACATGCTTTATCATACATGCATCATAGTTGTACTCCACCTATTGTTCATAGGGATATTTCAAGTAATAACATTCTATTGAATTCAGAATTAGACGCATTTGTAGCTGACTTTGGTGCTGCTAGATTGCTATCTTTCGATTCCTCCAATGAAACTACTCCCGCAGGCACCTACGGGTATATTGCTCCAGAACTTGCCTTTTCCTTGGTGGTGACTGAAAAATGTGATGTTTATAGCTTTGGGGTGGTGGCACTTGAAATAATCATGGGAAGGCATCCCGGAGATCTCCTCTCATCATTAGCATCTCCGTCTATTCAAAATCTAATAGTTAATGATGTGATGGACCCACGACTCTCACGTCCAACAGATAGACTAGTTGAATGGGACATTGCTATGGTGTTGAGGTTGGCGTTTTCATGCTTATGCTCTAATCCCACATCTCGGCCTACAATGGAAAGAGTGTCAAAAGAGTTTCTTGTACCCAGGAAGCCACTGCCCAGACCTCTTCACTTGACTTCACTGTCGGATCTACGAATCCGTAAATAG

Network for GWHGAAZE015638

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	409	669	1.70E-44

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.158
	SRR3591706	second leaf	0.320
	SRR3591707	mature leaf	2.718
	SRR3591708	Shoot apex	0.044
	SRR3591709	Stem	2.235
	SRR3591710	White floral bud	0.733
	SRR3591711	White flower	4.232
	SRR3591712	Green floral bud	0.634
	SRR3591713	Yellow flower	4.860
SRP173429	SRR8316895	Juvenile bud stage	4.508
	SRR8316896	Juvenile bud stage	7.719
	SRR8316897	Juvenile bud stage	1.894
	SRR8316894	Third green stage	2.763
	SRR8316900	Third green stage	1.703
	SRR8316901	Third green stage	1.790
	SRR8316898	Complete white stage	1.338
	SRR8316899	Complete white stage	4.315
	SRR8316903	Complete white stage	1.000
	SRR8316902	Silver flowering stage	19.829
	SRR8316904	Silver flowering stage	17.878
	SRR8316905	Silver flowering stage	10.859
	SRR8316906	Gold flowering stage	47.636
	SRR8316907	Gold flowering stage	41.115
	SRR8316908	Gold flowering stage	58.785
SRP132670	SRR6706286	Control	2.983
	SRR6706287	Light intensity 50%	3.621
	SRR6706288	Light intensity 20%	1.545
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.979
	CNS0095593	Slightly white alabastrum(diploid) 2	1.260
	CNS0095594	Slightly white alabastrum(diploid) 3	4.060
	CNS0095595	Whole white alabastrum(diploid) 2	0.664
	CNS0095596	Whole white alabastrum(diploid) 3	0.369
	CNS0095597	Whole white alabastrum(diploid) 4	1.006
	CNS0095598	Silvery flower (diploied) 1	4.266
	CNS0095599	Silvery flower (diploied) 2	2.388
	CNS0095600	Silvery flower (diploied) 3	5.422
	CNS0095601	Golden flower (diploid) 1	7.223
	CNS0095602	Golden flower (diploid) 2	6.817
	CNS0095603	Golden flower (diploid) 3	6.048
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.092
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.090
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.862
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.040
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.555
	CNS0095610	Silvery flower (tetraploid) 1	4.540
	CNS0095611	Silvery flower (tetraploid) 2	2.092
	CNS0095612	Silvery flower (tetraploid) 3	1.178
	CNS0095613	Golden flower (tetraploid) 1	2.084
	CNS0095614	Golden flower (tetraploid) 2	5.063
	CNS0095615	Golden flower (tetraploid) 3	0.769
CRA001975	CRR073297	Stem 1	0.044
	CRR073298	Stem 2	0.352
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.349
	CRR073301	Leaf 2	0.306
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.039
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.074
	CRR073306	Third green 1	23.449
	CRR073307	Third green 2	5.859
	CRR073308	Third green 3	11.772
	CRR073309	Second white 1	17.249
	CRR073310	Second white 2	33.289
	CRR073311	Second white 3	30.582
	CRR073312	Silver flowering 1	16.211
	CRR073313	Silver flowering 2	13.125
	CRR073314	Silver flowering 3	11.304
	CRR073315	Gold flowering 1	0.458
	CRR073316	Gold flowering 2	0.909
	CRR073317	Gold flowering 3	0.453
	CRR073318	Tawny withering 1	0.374
	CRR073319	Tawny withering 2	0.796
	CRR073320	Tawny withering 3	0.000