Gene detail

Detail information of GWHGAAZE015636

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010030332.1	0	PREDICTED: LOW QUALITY PROTEIN: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Eucalyptus grandis]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	8E-137	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A0A059AJK2\|A0A059AJK2_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW54202.1}
TAIR10	AT4G08850.1	2E-105	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	51344778	51347010	-
GWHAAZE00000004	mRNA	51344778	51347010	-
GWHAAZE00000004	exon	51346944	51347010	-
GWHAAZE00000004	exon	51345279	51346781	-
GWHAAZE00000004	exon	51344778	51345130	-
GWHAAZE00000004	CDS	51346944	51347010	-
GWHAAZE00000004	CDS	51345279	51346781	-
GWHAAZE00000004	CDS	51344778	51345130	-

Transcript Sequence
>GWHTAAZE015652 ATGGCTTCGGCTACTTGCCTCAATTTTTGTTCGGCACTAGTAGTGATGGTGGCTGTTTGGCTGGCAGGCATCGGTTGCAATAAGGCAGGAAGTGTAACTTCTATAAGCCGCCCTCAAGATTCATTTTTTGCTGGAGGTGATCTGGAGGCGCTCAACTTTTCTTACTTCCAAGACCTTGGAAGTTTTGATATTAACGGTCTTGAGCTTAAAGGGACCATCCCATATGAAATCGGCATGCTTTCCAAACTGACCTACCTTTCTCTTGCCAACAATTTTCTCTCAGGTGAGCTACCTCTCTCACTGTCTAACCTCACTAGCCTAACACTGCTCGACATTTCACATAATTCTATCAATGGCTCCATACCATTTGAAGAATTGGGGAAATTAAAGAATTTGAATGTTCTGATCCTTAGTGGCAACTTATTTTCTGGTCGAATCCCTTCTTCTATTGGTTTCTTGACCCATTTAACCGACTTAGACCTTTCTGAGAATCAACTCACGGGGTTCATTCCGTTAGAAGTAGGGAATCTTAGTAATTTGAATTCTTTGAGCCTCCATAAGAATAACCTTTCGGGTACTATACCATCAAAATTGGGACTCTTGACTAATTTGAGACATCTAGACCTTTCTTCAAATCATTTTAACGGCACAATTCCTGCTGATCTTTCTTTTTTGTCAAACTTAAACCACTTAGATCTCTCTTCCAACAATCTTGTTGGCCCTGTCCCCTCTAGCCATCGGAAATTGCGCTCCAACGAAGATATTTATTTGTCGGGCAATGACCTGGGGTTGGAGGGTAACCATAGCTATGAATTTGAAGTGAAGGACAAGAAGAAGCAGAGTAACACAATTAATCACTTTTTCCTCATTTTTATTCTTCCTGCCAACATTTCATTTTTGTTGGTGATCCTTGGCTATAAACTCTTTTCTTGGCATAACGCTGTAAGGAATAAAAGTGGGTCAGTAACAACGAAACACGGAAATTTGTTCTCCATATGGAATTATGATGGAACAATTGCATACGAAGACATAATTGCATCAACAAATGACTTCGATATCAAATACTGCATCGGCACTGGCAGTTATGGCAGTGTTTATAGAGCTCAACTACCTAGTAGCCAAGTAGTTGCCTTAAAGAAACTTCATCATTTTGAAGCCGAGAATCCAGCTTTCGACAAGTGCTTCAAGAATGAGGTACAAGTTTTATCAAATATAAGGCATAGAAACATTGTGAAGCTTTATGGGTTTTGTTTGCACAATAGATGCATGTTCTTAGTTTATGAATACATGGAAAGGGGAAGCTTATCATGTGCCCTCAGAGATGATGTCGTGGCTATCGAATTGGACTGGACTAAAAGGGTGAACATCGTTAAAGGCATAGCACATGCTTTATCTTACATGCATCATGATTGTACTCCACCTATTGTTCATAGGGATATTTCAAGCAAAAATGTTCTCTTGAACTCAAAATTAGATTCATTTGTAGCTGACTTTGGTGCTGCTAGATTACTATCTCCCAATTCCTCCAACCAAACTAATCCCGCAGGCACCTATGGATATATCGCTCCAGAACTTGCCTTTACCTTGGCGGTGACTGAAAAATGTGATGTTTATAGCTTTGGGGTGGTGGCACTTGAAATAATCATGGGAAGGCATCCGGGCGATCTCCTCTCATCGTTAGTGTCTCCGTCTATTCAAAATCCAATGGTGAATGATGTAATGGACCCACGACTCTCACGTCCAACAGATAAACTAGTTGAATGGGACATTGTTATGGTGTTGAGGTTGGCATTTTCATGCTTATGCTCTAATCCCATATCTCGGCCGACAATGGAAAGCGTGTCAAAAGAATTTCTAGTACCCAGGACGCCGCTGCCCAGACCTCTTCACTTGATTTCACTGTTGGAGCTACGGAATCCGTAA

Network for GWHGAAZE015636

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00560.34	LRR_1	82	104	1.3
PF00560.34	LRR_1	203	225	0.035
PF00069.26	Pkinase	355	616	1.90E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.091
	SRR3591706	second leaf	0.278
	SRR3591707	mature leaf	0.788
	SRR3591708	Shoot apex	0.002
	SRR3591709	Stem	0.837
	SRR3591710	White floral bud	0.231
	SRR3591711	White flower	1.273
	SRR3591712	Green floral bud	0.268
	SRR3591713	Yellow flower	0.292
SRP173429	SRR8316895	Juvenile bud stage	0.783
	SRR8316896	Juvenile bud stage	1.216
	SRR8316897	Juvenile bud stage	0.056
	SRR8316894	Third green stage	0.282
	SRR8316900	Third green stage	0.359
	SRR8316901	Third green stage	0.545
	SRR8316898	Complete white stage	0.060
	SRR8316899	Complete white stage	0.850
	SRR8316903	Complete white stage	0.348
	SRR8316902	Silver flowering stage	0.044
	SRR8316904	Silver flowering stage	0.096
	SRR8316905	Silver flowering stage	0.140
	SRR8316906	Gold flowering stage	0.181
	SRR8316907	Gold flowering stage	0.063
	SRR8316908	Gold flowering stage	0.375
SRP132670	SRR6706286	Control	0.469
	SRR6706287	Light intensity 50%	0.622
	SRR6706288	Light intensity 20%	0.267
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.914
	CNS0095593	Slightly white alabastrum(diploid) 2	0.667
	CNS0095594	Slightly white alabastrum(diploid) 3	1.875
	CNS0095595	Whole white alabastrum(diploid) 2	0.407
	CNS0095596	Whole white alabastrum(diploid) 3	0.035
	CNS0095597	Whole white alabastrum(diploid) 4	0.374
	CNS0095598	Silvery flower (diploied) 1	1.832
	CNS0095599	Silvery flower (diploied) 2	1.386
	CNS0095600	Silvery flower (diploied) 3	0.544
	CNS0095601	Golden flower (diploid) 1	2.998
	CNS0095602	Golden flower (diploid) 2	1.509
	CNS0095603	Golden flower (diploid) 3	0.831
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.006
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.081
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.101
	CNS0095611	Silvery flower (tetraploid) 2	0.009
	CNS0095612	Silvery flower (tetraploid) 3	0.021
	CNS0095613	Golden flower (tetraploid) 1	0.017
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.115
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.038
	CRR073301	Leaf 2	0.023
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.136
	CRR073305	Juvenile bud 3	0.245
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.044
	CRR073309	Second white 1	0.056
	CRR073310	Second white 2	0.002
	CRR073311	Second white 3	0.014
	CRR073312	Silver flowering 1	0.005
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.069
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.123
	CRR073317	Gold flowering 3	0.255
	CRR073318	Tawny withering 1	0.736
	CRR073319	Tawny withering 2	1.319
	CRR073320	Tawny withering 3	0.174