Gene detail

Detail information of GWHGAAZE015584

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074199.1	1.2337E-170	PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic [Sesamum indicum]
Swissprot	tr\|P21357\|AROF_SOLTU	8E-170	Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic (Precursor)
trEMBL	tr\|H9C957\|H9C957_IPOPU	2E-170	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000313\|EMBL:AFD62807.1}
TAIR10	AT1G22410.1	4E-119	Class-II DAHP synthetase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	49149293	49156560	+
GWHAAZE00000004	mRNA	49149293	49156560	+
GWHAAZE00000004	exon	49149293	49150002	+
GWHAAZE00000004	exon	49152462	49152744	+
GWHAAZE00000004	exon	49152860	49153156	+
GWHAAZE00000004	exon	49156300	49156560	+
GWHAAZE00000004	CDS	49149293	49150002	+
GWHAAZE00000004	CDS	49152462	49152744	+
GWHAAZE00000004	CDS	49152860	49153156	+
GWHAAZE00000004	CDS	49156300	49156560	+

Transcript Sequence
>GWHTAAZE015600 ATGGCTTCTATGGCTATCACAAGCGGCGTCAACTATCTTCTCCCACCAAAATCCTTTCAAACTCGCCAAGCTTCTTTCTCTCTATCTGCAAACCCCTGTAATTCAGTCAGATTCATTCGAAGCATCTCATCAGTCAATAGAGCTGCCATTCGACCAAACAGCACAATTGTCGTCCCTTCTGGTGACGATAAGCAGCGACGGCCACGAATGAAAAGTACCTCGTCGGCGATGGTGTGGGCGGTGGACAGTTGGAAAACGAAAGATGCATATGATAAATTGCCTCCTTACCCGGAAGAGGAGGAGTTGGAGTCGGTGCTTGAAACGCTTCAAGGGTTCCCTCCTCTTGTGTTTGCAGGGGAGGCGAGGAAATTGGAGGAACGCCTCGCGGAGGCAGCAAGGGGCAAGACCTTTTTGTTGCAAGGCGGATATTGTGCGGAGAGTTTCAACGAATTCAATGCTGATGATATTAGGGACATTTTTACGCTTCTACTCCAGATGGACTCTGTCCTCACGTTTGTTGGACAGGTGCCGGTCATCAAGGTTGGAAGAATCGCGGGTCAGTTTTCGAGGCACAATTATCATGACCCGTACCAATATGGAAACATGGGGTCGCGGGAGAAGCCCAGACTCGGGCGGCTGCCGAGTTACAGAGGTGACAACGTGAATGGAGCTGAGTTTGATATGAAGGCGAGGACTCCAGACCCTCAGAGGTACTGTGAACTTGCTACTAAAGTGGATAAGGCCCTTGAGTTTATGTCTGAGGCTGGAGTTACGATGGACAATCATCATATAATGAGAAAAACCATCGATTTTTGGACTTCCCATGAGTGCTTGCATTTGCCATATGAGCAATCTCTCATTAGGATGGATTCAACTTCTGGCTTATATTATGACTGCTCAGCCCATATGCTTTGGGTTGGAGAACGAACTCGCCAACTCGATGGTGCTCATGTCGAGTTCCTTAGAGGAGTTGCTAATCCCCTCGGAATTAAGGTGAGTCATAGGATTGATTCTAAAGAACTAGTGAAGTTGATCAAGATTTTGAACCCTCAAAATAAGCCAGGGAGGATTACATTAATAACAAGAATGGATGAATTACAAGTGAGGTATCATCTTCAACGTCTAATTAGGGCAGTTAAAAGATCAGGCCAAATAGTCACATGGGTTGTCGATCCTATGCATGCTAACATATTTAAGGGTCTCTTTCTTGGTGAAAAAGTTGCCTGCTTCAATTCTATCAAAGTAAGTGCTTGCTTTGCTCCTCATTTTTTGATTGTCGAGGAAGGAAAGAACGAAGTGAACGCGTTCTTTGACGTACTTGAGGAAGAAGGATGCTACCCAGGGGGAATTCATCTGGAGATTACAGGTCAAAATGTGCTGGAGCGCTGGGATGATAATCATGAACCCGATGGTAGCAAATTCTATCTCACCACCGATGTCGATCCGAGGCTCAATGCCAATCAATCTCTAAAGCTTGCCTTCATGGTTGCTGAACGCATACGCATTAAAAATAAGAAAATGTCTTTGGCAGAGTACAACTTTGGCAGTTAG

Network for GWHGAAZE015584

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01474.17	DAHP_synth_2	236	497	2.80E-78

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01626	E2.5.1.54, aroF, aroG, aroH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name
GO:0009073	biological_process	aromatic amino acid family biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0003849	molecular_function	3-deoxy-7-phosphoheptulonate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.741
	SRR3591706	second leaf	8.626
	SRR3591707	mature leaf	3.690
	SRR3591708	Shoot apex	12.068
	SRR3591709	Stem	5.195
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.063
	SRR3591712	Green floral bud	0.063
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.336
	SRR8316896	Juvenile bud stage	0.043
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.043
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.833
	SRR8316903	Complete white stage	0.192
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.138
	SRR6706287	Light intensity 50%	0.098
	SRR6706288	Light intensity 20%	0.317
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.315
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.717
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.464
	CNS0095598	Silvery flower (diploied) 1	0.520
	CNS0095599	Silvery flower (diploied) 2	0.477
	CNS0095600	Silvery flower (diploied) 3	0.130
	CNS0095601	Golden flower (diploid) 1	0.019
	CNS0095602	Golden flower (diploid) 2	0.404
	CNS0095603	Golden flower (diploid) 3	0.354
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.266
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.146
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.080
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.468
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.160
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.848
	CNS0095612	Silvery flower (tetraploid) 3	0.172
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.052
	CRR073298	Stem 2	0.067
	CRR073299	Stem 3	0.081
	CRR073300	Leaf 1	0.090
	CRR073301	Leaf 2	0.138
	CRR073302	Leaf 3	0.089
	CRR073303	Juvenile bud 1	0.301
	CRR073304	Juvenile bud 2	0.165
	CRR073305	Juvenile bud 3	0.117
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.046
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000