Gene detail

Detail information of GWHGAAZE015534

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006478216.1	0	PREDICTED: 12-oxophytodienoate reductase 2-like isoform X2 [Citrus sinensis]
Swissprot	tr\|Q8GYB8\|OPR2_ARATH	0	12-oxophytodienoate reductase 2
trEMBL	tr\|M5XGD8\|M5XGD8_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ24531.1}
TAIR10	AT1G76690.1	2E-161	12-oxophytodienoate reductase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	46005086	46008905	+
GWHAAZE00000004	mRNA	46005086	46008905	+
GWHAAZE00000004	exon	46005086	46005249	+
GWHAAZE00000004	exon	46005606	46005757	+
GWHAAZE00000004	exon	46007276	46007365	+
GWHAAZE00000004	exon	46008310	46008905	+
GWHAAZE00000004	CDS	46005086	46005249	+
GWHAAZE00000004	CDS	46005606	46005757	+
GWHAAZE00000004	CDS	46007276	46007365	+
GWHAAZE00000004	CDS	46008310	46008905	+

Transcript Sequence
>GWHTAAZE015550 CGTCTATTTTCGATTTTTTACAGAATTGTTTTGGCACCACTAACAAGGCAGAGATCGTACAACAATGTCCCTCAGCCACATGCTATCTTGTATTACTCTCAAAGAACCACTAAAGGGGGACTTCTCATAGCAGAAGCCACAGGAGTTTCAGATACTGCCCAAGGATATCCAGATACACCCGGGATATGGACAAAGGAACAAGTTGAAGCATGGAAACCCATTGTAGATGCTGTTCATGCCAAAGGTGGCATCTTCTTTTGTCAAATTTGGCATGTAGGGAGGGTTTCGAATCGAGGTATGTTACTAGCTTTCTTTCAGTTTACACCTCCACGACGGCTAGCTACAGATGAAATTCCTGAAATAGTCCGGCATTTTAGACTTGCCGCAAGAAATGCAATGGAAGCTGGTTTTGACGGGGTTGAGATCCACGGGGCTCATGGTTACCTAATAGACCAGTTTATGAAGGACCAAGTCAACGATCGAACGGACAAATATGGAGGCTCGCTAGAGAACCGTTGCAGGTTTGCTCTAGAGATAGTCGAGGCCGTTTCTAACGAAATAGGACCCGACAGAGTCGGCATAAGGCTTTCACCCTTCGCAAATTACATGGAGTCTGGTGATTCAGATCCAGAAGCTCTCGGTCTTTATATGTCCGAGTCACTGAATAAGTACAACATTCTCTACTGTCACATGGTTGAGCCGAGGATGAAAACCGTAGGTGAGAAAAGCGAATGCCCCCATAGCCTTGTGCCCATGAGGAAAGCTTTTAAAGGTACTTTCATAAGTGCTGGCGGGTTTGATAGGGAAGATGGCAACAAAGCTGTGGCTGAGAAGCGGACAGATCTTGTTGCTTATGGTCGGTTGTTCTTAGCAAACCCGGATTTGCCAAAGAGGTTTGAGCTCAATGCGCCACTCAACAAGTACAACAGGGATACATTCTATGTTCCTGAACCTGTTATTGGCTACACTGATTATCCATTTCTTGAAACAGCGACTGATTAA

Network for GWHGAAZE015534

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00724.21	Oxidored_FMN	7	305	3.90E-77

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05894	OPR	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0003824	molecular_function	catalytic activity
GO:0010181	molecular_function	FMN binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.458
	SRR3591706	second leaf	28.044
	SRR3591707	mature leaf	22.780
	SRR3591708	Shoot apex	20.274
	SRR3591709	Stem	24.476
	SRR3591710	White floral bud	42.886
	SRR3591711	White flower	142.387
	SRR3591712	Green floral bud	51.044
	SRR3591713	Yellow flower	146.119
SRP173429	SRR8316895	Juvenile bud stage	20.943
	SRR8316896	Juvenile bud stage	34.577
	SRR8316897	Juvenile bud stage	9.256
	SRR8316894	Third green stage	15.635
	SRR8316900	Third green stage	61.113
	SRR8316901	Third green stage	65.545
	SRR8316898	Complete white stage	30.850
	SRR8316899	Complete white stage	66.775
	SRR8316903	Complete white stage	34.578
	SRR8316902	Silver flowering stage	134.433
	SRR8316904	Silver flowering stage	137.408
	SRR8316905	Silver flowering stage	105.243
	SRR8316906	Gold flowering stage	285.947
	SRR8316907	Gold flowering stage	238.923
	SRR8316908	Gold flowering stage	196.862
SRP132670	SRR6706286	Control	38.283
	SRR6706287	Light intensity 50%	40.984
	SRR6706288	Light intensity 20%	41.090
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	51.042
	CNS0095593	Slightly white alabastrum(diploid) 2	91.343
	CNS0095594	Slightly white alabastrum(diploid) 3	69.423
	CNS0095595	Whole white alabastrum(diploid) 2	71.585
	CNS0095596	Whole white alabastrum(diploid) 3	49.644
	CNS0095597	Whole white alabastrum(diploid) 4	68.356
	CNS0095598	Silvery flower (diploied) 1	41.049
	CNS0095599	Silvery flower (diploied) 2	42.538
	CNS0095600	Silvery flower (diploied) 3	65.403
	CNS0095601	Golden flower (diploid) 1	42.300
	CNS0095602	Golden flower (diploid) 2	61.894
	CNS0095603	Golden flower (diploid) 3	57.272
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.505
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.535
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.157
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.622
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.512
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.380
	CNS0095610	Silvery flower (tetraploid) 1	57.494
	CNS0095611	Silvery flower (tetraploid) 2	39.132
	CNS0095612	Silvery flower (tetraploid) 3	29.206
	CNS0095613	Golden flower (tetraploid) 1	38.569
	CNS0095614	Golden flower (tetraploid) 2	67.982
	CNS0095615	Golden flower (tetraploid) 3	19.154
CRA001975	CRR073297	Stem 1	20.550
	CRR073298	Stem 2	22.096
	CRR073299	Stem 3	27.593
	CRR073300	Leaf 1	48.013
	CRR073301	Leaf 2	44.090
	CRR073302	Leaf 3	42.628
	CRR073303	Juvenile bud 1	49.141
	CRR073304	Juvenile bud 2	59.642
	CRR073305	Juvenile bud 3	51.853
	CRR073306	Third green 1	57.082
	CRR073307	Third green 2	64.308
	CRR073308	Third green 3	46.162
	CRR073309	Second white 1	48.854
	CRR073310	Second white 2	54.238
	CRR073311	Second white 3	28.836
	CRR073312	Silver flowering 1	34.816
	CRR073313	Silver flowering 2	53.628
	CRR073314	Silver flowering 3	33.527
	CRR073315	Gold flowering 1	28.904
	CRR073316	Gold flowering 2	29.189
	CRR073317	Gold flowering 3	21.271
	CRR073318	Tawny withering 1	25.972
	CRR073319	Tawny withering 2	46.979
	CRR073320	Tawny withering 3	16.090