Gene detail

Detail information of GWHGAAZE015528

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006478216.1	0	PREDICTED: 12-oxophytodienoate reductase 2-like isoform X2 [Citrus sinensis]
Swissprot	tr\|Q8GYB8\|OPR2_ARATH	0	12-oxophytodienoate reductase 2
trEMBL	tr\|M5XGD8\|M5XGD8_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ24531.1}
TAIR10	AT1G76690.1	2E-176	12-oxophytodienoate reductase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	45814954	45818769	+
GWHAAZE00000004	mRNA	45814954	45818769	+
GWHAAZE00000004	exon	45814954	45815117	+
GWHAAZE00000004	exon	45815475	45815605	+
GWHAAZE00000004	exon	45817058	45817234	+
GWHAAZE00000004	exon	45818174	45818769	+
GWHAAZE00000004	CDS	45814954	45815117	+
GWHAAZE00000004	CDS	45815475	45815605	+
GWHAAZE00000004	CDS	45817058	45817234	+
GWHAAZE00000004	CDS	45818174	45818769	+

Transcript Sequence
>GWHTAAZE015544 CGTCTATTTTCGATTTTTTACAGAATTGTTTTGGCACCACTAACAAGGCAGAGATCGTACAACAATGTCCCTCAGCCACATGCTATCTTGTATTACTCTCAAAGAACCACTAAAGGGGGACTTCTCATAGCAGAAGCCACAGGAGTTTCAGATACTGCCCAAGGATATCCAGATACACCCGGGATATGGACAAAGGAACAAGTTGAAGCATGGAAACCCATTGTAGATGCTGTTCATGCCAAAGGTGGCATCTTCTTTTGTCAAATTTGGCATGTTGGGAGGGTTTCGAATCGAGGATTTCAGCCAAATGGACAGGATCCAATTTCGTCTACGGACAAGCCATTAACTCCTCAAATACGAAGCAATGGCATAGATGTTGCAGAGTTTACACCTCCACGACGGCTAGCTACAGATGAAATTCCTGAAATTGTCCAGCATTTTAGACTTGCCGCAAGAAATGCAATGGAAGCTGGTTTTGACGGGGTTGAGATCCATGGGGCTCATGGTTACCTAATAGACCAGTTTATGAAGGACCAAGTCAACGATCGAACGGACAAATATGGAGGCTCGCTAGAGAACCGTTGCAGGTTTGCTCTAGAGATAGTCAAGGCCGTTTCTAACGAAATAGGACCCGACAGAGTCGGCATAAGGCTTTCACCCTTCGCAAATTACATGGAGTCTGGTGATTCGGATCCAGAAGCTCTCGGTCTTTATATGTCCGAATCACTGAATAAGTACAACATTCTCTACTGTCACATGGTTGAGCCGAGGATGAAAACCGTAGGTGAGAAAAGCGAATGCCCCCATAGCCTTGTGCCCATGAGGAAAGCTTTTAAAGGTACTTTCATAAGTGCTGGCGGGTTTGATAGGGAAGATGGCAACAAAGCTGTGGCTGAGAAGCGGACAGATCTTGTTGCTTTTGGTCGGTTGTTCTTAGCAAACCCGGATTTGCCAAAGAGGTTTGAGCTCAATGCGCCACTCAACAAGTACAACAGGGATACATTCTATGTTCCTGAACCTGTTATTGGCTACACTGATTATCCATTTCTTGAAACAGCGACTGATTAA

Network for GWHGAAZE015528

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00724.21	Oxidored_FMN	7	327	1.20E-81

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05894	OPR	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0010181	molecular_function	FMN binding
GO:0016491	molecular_function	oxidoreductase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.739
	SRR3591706	second leaf	41.500
	SRR3591707	mature leaf	30.269
	SRR3591708	Shoot apex	30.101
	SRR3591709	Stem	33.644
	SRR3591710	White floral bud	74.674
	SRR3591711	White flower	235.384
	SRR3591712	Green floral bud	79.613
	SRR3591713	Yellow flower	221.160
SRP173429	SRR8316895	Juvenile bud stage	30.759
	SRR8316896	Juvenile bud stage	50.790
	SRR8316897	Juvenile bud stage	43.499
	SRR8316894	Third green stage	27.168
	SRR8316900	Third green stage	98.811
	SRR8316901	Third green stage	98.293
	SRR8316898	Complete white stage	44.595
	SRR8316899	Complete white stage	111.584
	SRR8316903	Complete white stage	51.148
	SRR8316902	Silver flowering stage	189.629
	SRR8316904	Silver flowering stage	194.704
	SRR8316905	Silver flowering stage	148.160
	SRR8316906	Gold flowering stage	442.032
	SRR8316907	Gold flowering stage	358.687
	SRR8316908	Gold flowering stage	525.256
SRP132670	SRR6706286	Control	58.920
	SRR6706287	Light intensity 50%	63.992
	SRR6706288	Light intensity 20%	68.451
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	68.226
	CNS0095593	Slightly white alabastrum(diploid) 2	124.478
	CNS0095594	Slightly white alabastrum(diploid) 3	90.197
	CNS0095595	Whole white alabastrum(diploid) 2	96.943
	CNS0095596	Whole white alabastrum(diploid) 3	66.318
	CNS0095597	Whole white alabastrum(diploid) 4	86.909
	CNS0095598	Silvery flower (diploied) 1	51.203
	CNS0095599	Silvery flower (diploied) 2	62.833
	CNS0095600	Silvery flower (diploied) 3	103.623
	CNS0095601	Golden flower (diploid) 1	62.194
	CNS0095602	Golden flower (diploid) 2	90.510
	CNS0095603	Golden flower (diploid) 3	93.488
	CNS0095604	Slightly white alabastrum(tetraploid) 1	101.034
	CNS0095605	Slightly white alabastrum(tetraploid) 2	90.156
	CNS0095606	Slightly white alabastrum(tetraploid) 3	179.225
	CNS0095607	Whole white alabastrum(tetraploid) 1	66.978
	CNS0095608	Whole white alabastrum(tetraploid) 2	81.640
	CNS0095609	Whole white alabastrum(tetraploid) 3	137.667
	CNS0095610	Silvery flower (tetraploid) 1	249.693
	CNS0095611	Silvery flower (tetraploid) 2	211.889
	CNS0095612	Silvery flower (tetraploid) 3	148.768
	CNS0095613	Golden flower (tetraploid) 1	136.000
	CNS0095614	Golden flower (tetraploid) 2	248.768
	CNS0095615	Golden flower (tetraploid) 3	85.259
CRA001975	CRR073297	Stem 1	33.936
	CRR073298	Stem 2	38.382
	CRR073299	Stem 3	46.150
	CRR073300	Leaf 1	73.370
	CRR073301	Leaf 2	67.955
	CRR073302	Leaf 3	77.990
	CRR073303	Juvenile bud 1	85.731
	CRR073304	Juvenile bud 2	91.358
	CRR073305	Juvenile bud 3	75.858
	CRR073306	Third green 1	95.995
	CRR073307	Third green 2	92.217
	CRR073308	Third green 3	65.419
	CRR073309	Second white 1	82.015
	CRR073310	Second white 2	88.756
	CRR073311	Second white 3	48.319
	CRR073312	Silver flowering 1	63.416
	CRR073313	Silver flowering 2	79.957
	CRR073314	Silver flowering 3	65.494
	CRR073315	Gold flowering 1	51.874
	CRR073316	Gold flowering 2	51.761
	CRR073317	Gold flowering 3	37.997
	CRR073318	Tawny withering 1	45.127
	CRR073319	Tawny withering 2	58.549
	CRR073320	Tawny withering 3	21.279