Gene detail

Detail information of GWHGAAZE015478

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP20266.1	6.31655E-78	unnamed protein product [Coffea canephora]
Swissprot	tr\|O80575\|RISB_ARATH	1E-72	6,7-dimethyl-8-ribityllumazine synthase, chloroplastic (Precursor)
trEMBL	tr\|A0A068VHT3\|A0A068VHT3_COFCA	2E-78	6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256\|RuleBase:RU003795}
TAIR10	AT2G44050.1	7E-59	6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	42630460	42644094	-
GWHAAZE00000004	mRNA	42630460	42644094	-
GWHAAZE00000004	exon	42643923	42644094	-
GWHAAZE00000004	exon	42640503	42640576	-
GWHAAZE00000004	exon	42639900	42639995	-
GWHAAZE00000004	exon	42634031	42634126	-
GWHAAZE00000004	exon	42630961	42631039	-
GWHAAZE00000004	exon	42630683	42630729	-
GWHAAZE00000004	exon	42630460	42630528	-
GWHAAZE00000004	CDS	42643923	42644094	-
GWHAAZE00000004	CDS	42640503	42640576	-
GWHAAZE00000004	CDS	42639900	42639995	-
GWHAAZE00000004	CDS	42634031	42634126	-
GWHAAZE00000004	CDS	42630961	42631039	-
GWHAAZE00000004	CDS	42630683	42630729	-
GWHAAZE00000004	CDS	42630460	42630528	-

Transcript Sequence
>GWHTAAZE015494 ATGGCTGCCACTTCGTTCATTGACCCTTGTTCTTCTCTTCACCTTCGCCCTTCATCATCGCTGAACCCAAAAGGATTCAGTAATAATACTCAGCAACACTCTCCTCCTTTTTCCTTGTCATCATGGCATTCAATTTCAGCCAAAACAACCCCATTATCGATCCAACCCCAAGAGGATAGTGTGGTACCCTTTGGGTTTGACAACAGAGCGCACAGTTACTGCAGATGGCTTAAGCTTGAGGATCAGGTGGTAGCACGGTTCAACGAGATCGTAACAAGGCCATTGTTGGCAGGAGCTCTGGACACTTTCCAGAAATATGCAGTTAAAGAAGAAGACATTGATGTTGTGTGGGTTCCTGGGAGTTTTGAAATTGGTCTAGTTGCAGAAAGGCTGGGGAAGTCAAGAAAGTATCAAGCAATTTTGTGTATTGGAGCTGTGGTAAGAGGTGATACTACCCACTATGATGCTGTAGCAAATTCGGCAGCATCTGGAGTACTCTCAGCAGGCCTGAATTCAGGTGTTCCTTGCATATTTGGCGTCTTGACTTGTGAAGACATGGATCAGGCCTTAAATCGTGCTGGTGGTAAATCAGGGAATAAAGGCTCTGAAGCTGCTCTTACTGCTGTAAGTTAA

Network for GWHGAAZE015478

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00885.20	DMRL_synthase	83	209	1.80E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00794	ribH, RIB4	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Riboflavin metabolism	map00740

Gene Ontology

GO term	Ontology	Name
GO:0009231	biological_process	riboflavin biosynthetic process
GO:0009349	cellular_component	riboflavin synthase complex
GO:0000906	molecular_function	6,7-dimethyl-8-ribityllumazine synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	75.517
	SRR3591706	second leaf	34.975
	SRR3591707	mature leaf	21.899
	SRR3591708	Shoot apex	78.418
	SRR3591709	Stem	45.617
	SRR3591710	White floral bud	61.064
	SRR3591711	White flower	61.615
	SRR3591712	Green floral bud	87.470
	SRR3591713	Yellow flower	74.790
SRP173429	SRR8316895	Juvenile bud stage	43.164
	SRR8316896	Juvenile bud stage	53.592
	SRR8316897	Juvenile bud stage	32.976
	SRR8316894	Third green stage	26.336
	SRR8316900	Third green stage	116.037
	SRR8316901	Third green stage	94.067
	SRR8316898	Complete white stage	26.170
	SRR8316899	Complete white stage	91.450
	SRR8316903	Complete white stage	35.777
	SRR8316902	Silver flowering stage	26.688
	SRR8316904	Silver flowering stage	29.251
	SRR8316905	Silver flowering stage	17.447
	SRR8316906	Gold flowering stage	59.239
	SRR8316907	Gold flowering stage	51.219
	SRR8316908	Gold flowering stage	57.274
SRP132670	SRR6706286	Control	92.462
	SRR6706287	Light intensity 50%	99.827
	SRR6706288	Light intensity 20%	110.062
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	58.434
	CNS0095593	Slightly white alabastrum(diploid) 2	62.031
	CNS0095594	Slightly white alabastrum(diploid) 3	50.747
	CNS0095595	Whole white alabastrum(diploid) 2	65.172
	CNS0095596	Whole white alabastrum(diploid) 3	64.008
	CNS0095597	Whole white alabastrum(diploid) 4	43.259
	CNS0095598	Silvery flower (diploied) 1	34.356
	CNS0095599	Silvery flower (diploied) 2	45.187
	CNS0095600	Silvery flower (diploied) 3	45.082
	CNS0095601	Golden flower (diploid) 1	40.140
	CNS0095602	Golden flower (diploid) 2	38.807
	CNS0095603	Golden flower (diploid) 3	39.230
	CNS0095604	Slightly white alabastrum(tetraploid) 1	48.078
	CNS0095605	Slightly white alabastrum(tetraploid) 2	44.311
	CNS0095606	Slightly white alabastrum(tetraploid) 3	79.795
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.337
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.151
	CNS0095609	Whole white alabastrum(tetraploid) 3	74.915
	CNS0095610	Silvery flower (tetraploid) 1	62.763
	CNS0095611	Silvery flower (tetraploid) 2	59.298
	CNS0095612	Silvery flower (tetraploid) 3	48.521
	CNS0095613	Golden flower (tetraploid) 1	40.335
	CNS0095614	Golden flower (tetraploid) 2	49.804
	CNS0095615	Golden flower (tetraploid) 3	40.592
CRA001975	CRR073297	Stem 1	61.866
	CRR073298	Stem 2	67.963
	CRR073299	Stem 3	62.843
	CRR073300	Leaf 1	71.768
	CRR073301	Leaf 2	75.790
	CRR073302	Leaf 3	96.889
	CRR073303	Juvenile bud 1	90.241
	CRR073304	Juvenile bud 2	93.242
	CRR073305	Juvenile bud 3	68.904
	CRR073306	Third green 1	53.439
	CRR073307	Third green 2	41.724
	CRR073308	Third green 3	41.137
	CRR073309	Second white 1	47.856
	CRR073310	Second white 2	34.578
	CRR073311	Second white 3	29.924
	CRR073312	Silver flowering 1	40.360
	CRR073313	Silver flowering 2	46.321
	CRR073314	Silver flowering 3	28.899
	CRR073315	Gold flowering 1	46.311
	CRR073316	Gold flowering 2	56.798
	CRR073317	Gold flowering 3	43.062
	CRR073318	Tawny withering 1	49.184
	CRR073319	Tawny withering 2	36.681
	CRR073320	Tawny withering 3	59.637