Detail information of GWHGAAZE015414


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP03254.11.85579E-86unnamed protein product [Coffea canephora]
Swissprottr|Q9SZE1|3HID1_ARATH5E-82Probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial (Precursor)
trEMBLtr|A0A068U523|A0A068U523_COFCA7E-87Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313|EMBL:CDP03254.1}
TAIR10AT4G29120.13E-606-phosphogluconate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene3865603538656532-
GWHAAZE00000004mRNA3865603538656532-
GWHAAZE00000004exon3865603538656532-
GWHAAZE00000004CDS3865603538656532-
Transcript Sequence

Network for GWHGAAZE015414

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03446.16NAD_binding_221585.20E-44
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00020HIBADH, mmsB Metabolic pathways map01100
Valine, leucine and isoleucine degradationmap00280

Gene Ontology

GO term OntologyName
GO:0050661molecular_functionNADP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.436
SRR3591706second leaf11.439
SRR3591707mature leaf12.807
SRR3591708Shoot apex20.459
SRR3591709Stem15.229
SRR3591710White floral bud14.674
SRR3591711White flower9.890
SRR3591712Green floral bud25.525
SRR3591713Yellow flower5.688
SRP173429 SRR8316895Juvenile bud stage 8.765
SRR8316896Juvenile bud stage 14.252
SRR8316897Juvenile bud stage 8.060
SRR8316894Third green stage 3.395
SRR8316900Third green stage 16.564
SRR8316901Third green stage 15.383
SRR8316898Complete white stage 5.913
SRR8316899Complete white stage 20.569
SRR8316903Complete white stage 6.736
SRR8316902Silver flowering stage2.866
SRR8316904Silver flowering stage4.847
SRR8316905Silver flowering stage1.662
SRR8316906Gold flowering stage 4.776
SRR8316907Gold flowering stage 4.472
SRR8316908Gold flowering stage 6.453
SRP132670SRR6706286Control17.183
SRR6706287Light intensity 50%18.096
SRR6706288Light intensity 20%18.953
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.517
CNS0095593Slightly white alabastrum(diploid) 29.070
CNS0095594Slightly white alabastrum(diploid) 38.452
CNS0095595Whole white alabastrum(diploid) 29.472
CNS0095596Whole white alabastrum(diploid) 314.558
CNS0095597Whole white alabastrum(diploid) 410.049
CNS0095598Silvery flower (diploied) 17.541
CNS0095599Silvery flower (diploied) 211.617
CNS0095600Silvery flower (diploied) 315.787
CNS0095601Golden flower (diploid) 19.275
CNS0095602Golden flower (diploid) 217.975
CNS0095603Golden flower (diploid) 316.564
CNS0095604Slightly white alabastrum(tetraploid) 124.787
CNS0095605Slightly white alabastrum(tetraploid) 221.251
CNS0095606Slightly white alabastrum(tetraploid) 329.622
CNS0095607Whole white alabastrum(tetraploid) 116.041
CNS0095608Whole white alabastrum(tetraploid) 214.835
CNS0095609Whole white alabastrum(tetraploid) 329.614
CNS0095610Silvery flower (tetraploid) 118.208
CNS0095611Silvery flower (tetraploid) 217.907
CNS0095612Silvery flower (tetraploid) 310.792
CNS0095613Golden flower (tetraploid) 14.944
CNS0095614Golden flower (tetraploid) 211.433
CNS0095615Golden flower (tetraploid) 36.500
CRA001975CRR073297Stem 111.081
CRR073298Stem 213.406
CRR073299Stem 319.529
CRR073300Leaf 118.194
CRR073301Leaf 218.528
CRR073302Leaf 315.358
CRR073303Juvenile bud 117.439
CRR073304Juvenile bud 223.272
CRR073305Juvenile bud 322.440
CRR073306Third green 16.380
CRR073307Third green 27.839
CRR073308Third green 38.136
CRR073309Second white 17.519
CRR073310Second white 23.523
CRR073311Second white 31.485
CRR073312Silver flowering 12.665
CRR073313Silver flowering 22.018
CRR073314Silver flowering 33.065
CRR073315Gold flowering 117.048
CRR073316Gold flowering 219.130
CRR073317Gold flowering 319.124
CRR073318Tawny withering 114.376
CRR073319Tawny withering 211.216
CRR073320Tawny withering 314.418