Gene detail

Detail information of GWHGAAZE015413

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011078243.1	PREDICTED: receptor-like protein kinase HSL1 [Sesamum indicum]
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|F6HGY4\|F6HGY4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51482.1}
TAIR10	AT5G25930.1	Protein kinase family protein with leucine-rich repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	38604070	38608720	-
GWHAAZE00000004	mRNA	38604070	38608720	-
GWHAAZE00000004	exon	38604070	38604497	-
GWHAAZE00000004	exon	38606099	38607719	-
GWHAAZE00000004	exon	38607845	38608720	-
GWHAAZE00000004	CDS	38607845	38608720	-
GWHAAZE00000004	CDS	38606099	38607719	-
GWHAAZE00000004	CDS	38604070	38604497	-

Transcript Sequence
>GWHTAAZE015429 ATGATGAAAACACCTCCGCCATCTGTCGCCGTCCTCTCTTTCCTTCTCTTCATCCTACCCTTCCATGTAAACTCCCAAACCATCAATGGCCAAGAACAATCAATCCTTCTCAACCTAAAACAATATTGGTCCAATCCATCATCAATCGACCACTGGGCCCCATCATCCAATTCCACCGCCCACTGTAGCTGGAGGGGGATCACCTGCACCGGCGGTTCCGTCACCGGAATCGCACTCGTCGATAGAGGCATCGCCGGAGATATCCCAGCGTTCATTTGCGACCTCAAAAACCTCACCACCATCGATCTCTCGTTCAATGAAATCCCCGGTCCTTTCCCGACCGTTCTCTATAGCTGTTCCAATCTTCAACACTTAGACCTCTCTCAAAACTTTTTTGTTGGCCGGATTCCGGCTGACATTGACCGGTTATCGCCTCGGCTTCAGTACCTCAGCCTCAGTGCCAACAACTTCACTGGTGACATTCCGGCAGCTATTGCCCGATTCCCGGAGCTCACCACTCTTTCTCTATATCAAAATTTGTTTAACGGCTCATTCCCGCAGGAAATCGGGAATTTGTCGAATCTTGAATATCTTGAATTGGCCTTTAATGGGTTTACTCCATCAACGATTCCGGGGAGTTTTGCGAATTTGACGAAGCTGAGAAGTTTGTACATGACCGAATCAAAGCTTATCGGAGAAATCCCGGAGAGTATCGGAAGTTTGACCGCCCTCGAGTTCATCGATTTATCTGTAAATGATTTGAGTGGTAATATCCCAAGAGGGTTCTTCTTGTTGAAGAACTTAACTGAGATATATCTTTACCGTAACGGGTTGACTGGGTCGATTCCTCAATCTGTTGAAGCCTTGAATTTGAAGCCGGCTGCCGGAGCTGAAAATGTCCGTTTGTTTGGCAACAATCTGAGCGGAAGAATACCGCCGGACTTTGGGCGATTTTCAAAGCTCATAGTCTTTGAAGTTGACAACAACCAATTAGTTGGAGGGTTGCCGGAAAATTTATGCGCAGGTGGTGTGTTGGCAGGTGCTGTTGCGTCTGTCAACAATCTTAGTGGCGAAATCCCCAAATCACTTGGGAATTGTAGTAGTTTGTTGACTCTTCAGGTTTTTAATAATCGGTTTTCTGGTCGGATTCCCGATGGTTTGTGGACATCTCCAAATATGATGATCTTGAGGCTAAGCGATAATTTTTTTACCGGTCAGTTACCGGAAAAAATCTCGTCGAATTTAACCCTAATTGAAATCAGCAACAATAATTTCTCTGGCAAGATTCCGGCCAGTGTGTCTTCTTGGAACAATTTGAGGGAGTTGAAAGCAAGCAATAATTTGTTCGTGGGTACAATTCCTCAAGAACTCACTTCTCTTCCATTTCTGGGGACACTTTTGCTCGATTGGAATCAACTTTCCGGGCAAATTCCATCAAATATTATTTCCTGGACGTCGCTATCATCTTTAAGTCTCAGTCATAACCAACTCCATGGCGAAATTCCTGCCGGACTGGGATTTTTACCTGTCCTCACAGAGCTGGACTTGTCGGCAAATGATCTTTCTGGTCAAATTCCGGCCGAAGTTGGAAAGTTGAGGCTAACTTCTCTCAATCTCTCCTCCAATCTCCTCATCGGAAAACTTCCCGGTCCATTTGAAAACGGAGCTTTCGAAAACAGCTTCTTGAACAATCCCGGCCTTTGTACAGATAACCCATCACTAGGCCTCCAAACTTGCCGATCCACTCCAAGAAATACCCGCAAAATTTCCTCGCAGTTCATTATTGTTGTCACAAGCATTGCGTTTGTGGTTCTCATAGCCGCTCTCCTTTTCTCTCTCTATCTCATCAAAAATTTTAGAAAGGAAAAGCGCGGGTTAGAAACGTGGAAGCTCACTTCTTTCCAGAGACTCAGTTTCACTGAATCCACCATTTTGTCAAGTTTGACAGACAATAACACAATCGGAAGTGGCGGGTCTGGGAAAGTATACCGAGTAGCAATTAACCGTTCAGGTGAATCAGTCGCGGTTAAGAGGATATGGACCAACATGAAACTGGACCATCATTTGGAGAATCAATTTAATTCCGAAGTTGAGATACTAAGCACAATTCGACACTCCAACATAGTGAAACTAATGTGCTGCATTTCAAGTGAGAAATCGAAGCTCCTTGTGTACCCATATTTTGGAAACCAGAGTTTGGATCAGTGGCTTCATGGGAAGGAAAGATCATTGAGCGGCTCAGCCTCGGTGCACCATGTAGTCTTGGAGTGGCCTAAGAGGCTGCAGATTGCAGTGGGGGCGGCTCGTGGGCTGTGCTACATGCACCACGACTGCTTGCCTCCGATCATTCACCGGGATGTCAAATCGAGCAACATACTATTGGATTCAGAATTCAATGCGAAAATTGCGGATTTCGGTCTAGCCCGGATCTTGATCAAGGATGGTGGGCTTAATACAATGTCAGCTGTGGCGGGATCTTTCGGCTACATAGCTCCCGAGTACGCACAGACAACAAGAGTGAACGAAAAGATAGATGTGTATAGCTTCGGGGTTGTCCTACTAGAGCTAGTGACAGGAAAAGAAGCAAATAAGGGAGACGAGGATACCAATCTAGCCGAATGGGCATGGCAACATATTCAAAAAGGGTACCCCATAACTGATGCCTTGGACTCCAACATCAAGGAGCCTTGTTACTTGGATGAGATGATTGACGTTTTTAAACTTGGGATCATTTGTACTGGAACACTTCCATCGACCAGGCCTAGCATGAAGGAGGTTTTGCAGATTTTGCTTCGGTGTAGCCCAATGCTGGCATTTGGGGAAAAGAATGTTGCAAGTGAGGTGGATTCTCTTCCCCTTCTTAAGAACTCCAAGCGTGAGAGGGAGTTAGAAGGTGAAAATGATGGTTTGGGGTCAATTGTTTGA

Network for GWHGAAZE015413

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	31	69	1.60E-05
PF00560.34	LRR_1	121	142	0.12
PF13855.7	LRR_8	145	204	2.80E-08
PF00560.34	LRR_1	533	554	1.7
PF00069.26	Pkinase	650	928	4.10E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.080
	SRR3591706	second leaf	0.750
	SRR3591707	mature leaf	2.386
	SRR3591708	Shoot apex	0.138
	SRR3591709	Stem	3.280
	SRR3591710	White floral bud	1.886
	SRR3591711	White flower	21.254
	SRR3591712	Green floral bud	1.114
	SRR3591713	Yellow flower	51.737
SRP173429	SRR8316895	Juvenile bud stage	0.204
	SRR8316896	Juvenile bud stage	1.043
	SRR8316897	Juvenile bud stage	0.448
	SRR8316894	Third green stage	1.198
	SRR8316900	Third green stage	0.198
	SRR8316901	Third green stage	0.494
	SRR8316898	Complete white stage	0.386
	SRR8316899	Complete white stage	1.488
	SRR8316903	Complete white stage	0.543
	SRR8316902	Silver flowering stage	5.121
	SRR8316904	Silver flowering stage	8.111
	SRR8316905	Silver flowering stage	3.174
	SRR8316906	Gold flowering stage	32.915
	SRR8316907	Gold flowering stage	24.362
	SRR8316908	Gold flowering stage	50.714
SRP132670	SRR6706286	Control	1.442
	SRR6706287	Light intensity 50%	1.615
	SRR6706288	Light intensity 20%	1.057
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.795
	CNS0095593	Slightly white alabastrum(diploid) 2	0.522
	CNS0095594	Slightly white alabastrum(diploid) 3	0.781
	CNS0095595	Whole white alabastrum(diploid) 2	0.461
	CNS0095596	Whole white alabastrum(diploid) 3	0.088
	CNS0095597	Whole white alabastrum(diploid) 4	0.476
	CNS0095598	Silvery flower (diploied) 1	1.324
	CNS0095599	Silvery flower (diploied) 2	1.005
	CNS0095600	Silvery flower (diploied) 3	5.873
	CNS0095601	Golden flower (diploid) 1	1.970
	CNS0095602	Golden flower (diploid) 2	11.556
	CNS0095603	Golden flower (diploid) 3	11.020
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.122
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.183
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.773
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.068
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.171
	CNS0095610	Silvery flower (tetraploid) 1	6.196
	CNS0095611	Silvery flower (tetraploid) 2	2.651
	CNS0095612	Silvery flower (tetraploid) 3	4.228
	CNS0095613	Golden flower (tetraploid) 1	10.769
	CNS0095614	Golden flower (tetraploid) 2	16.378
	CNS0095615	Golden flower (tetraploid) 3	14.098
CRA001975	CRR073297	Stem 1	1.090
	CRR073298	Stem 2	0.722
	CRR073299	Stem 3	0.542
	CRR073300	Leaf 1	0.880
	CRR073301	Leaf 2	0.863
	CRR073302	Leaf 3	0.705
	CRR073303	Juvenile bud 1	0.781
	CRR073304	Juvenile bud 2	0.339
	CRR073305	Juvenile bud 3	1.610
	CRR073306	Third green 1	0.839
	CRR073307	Third green 2	0.277
	CRR073308	Third green 3	1.027
	CRR073309	Second white 1	3.462
	CRR073310	Second white 2	5.527
	CRR073311	Second white 3	7.239
	CRR073312	Silver flowering 1	26.052
	CRR073313	Silver flowering 2	19.915
	CRR073314	Silver flowering 3	16.829
	CRR073315	Gold flowering 1	0.772
	CRR073316	Gold flowering 2	2.209
	CRR073317	Gold flowering 3	1.656
	CRR073318	Tawny withering 1	10.366
	CRR073319	Tawny withering 2	18.502
	CRR073320	Tawny withering 3	4.049