Gene detail

Detail information of GWHGAAZE015408

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO66581.1	0	hypothetical protein CISIN_1g001778mg [Citrus sinensis]
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	2E-107	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|A0A067FTN8\|A0A067FTN8_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO66581.1}
TAIR10	AT5G25930.1	9E-141	Protein kinase family protein with leucine-rich repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	38263166	38265469	+
GWHAAZE00000004	mRNA	38263166	38265469	+
GWHAAZE00000004	exon	38263166	38263869	+
GWHAAZE00000004	exon	38263990	38265469	+
GWHAAZE00000004	CDS	38263166	38263869	+
GWHAAZE00000004	CDS	38263990	38265469	+

Transcript Sequence
>GWHTAAZE015424 ATGGCGAAAACACACCCACCATCTCTCCTTATACTCTCTTTCCTTCTCCTCTTCATCCTACCCTTCCATGTAAACTCCCAAACCATCAATGGCCAAGAACAATCAATCCTTCTTAGCCTAAAACAATATTGGTCCAATCCATCATCAATCGACCACTGGGCCCCCTCATCCAATTCCACCGCCCACTGTAGCTGGCCGGCGATCACCTGCAGCGGCGGTTCCGTCACCGGAATCGCACTCGTCAATATAGGCATCGCCGGAGATATCCCACCGTTCATTTGCGACCTCAAAAACCTCAACACCATCGATCTCTCCTTTAATGAAATCCCCGGTCCTTTCCCGACAGTTCTCTATAACTGTTCCAATCTTCAACACTTGGACCTCTCTCAAAACTTTTTGTTGGCGGATTCGGCTGATATTGACGGTTATCGCCTCGGCTTCAGTACCTCAGCCTCAGCGCCAACAACTTCACTGGCGACATTCTGGCAGCCATTGCCCGATTCGGAGCTCACCACTCTTTCTCTATCTCAAAATTTGTTTAATGGCTCATTCCGCCAGAAATCGGGAACTTATCGAATCTTGAAGTTCTTGAATTGGGCTATAACGGGTTTACTCCATCCACGATTCCGGGAGTTTTGCAAATTTGACAAAGCTGAGAAGACTGTACATGACGGGTTCGATGCTGACCGGAGAAATCCCGGAAAGTTGACGGGGTCGATTCCTCAATCTGTTGACGCCTTGAATTTGAAGATAATTGATCTATCTGCAAATTATTTGACCGGGCCAATACCGGAAGGTTTCGGAAATCAGACGCAACTGACGAATTTGACCCTGTTATACAATAAATTATCTGGCGAAATTCCGGTGAGTATTGGCCGGTTGGCGGAGCTGAAAAATGTCCGTTTGTTTGGCAATAATCTGAGTGGAAGTATACCGCCAGACTTTGGGCGATTTTCGAAGCTCATAATCTTTGAAGTTAACGACAACCAATTAGTCGGAGGGTTGCCGGAAAATTTATGCGTCGGTGGGGTGTTGGCAGGTGCTATTGCGTCTAAGAACAATCTTAGTGGCAAAATCCCAAAATCACTTGGGAATTGTAGTAGTTTGTTGATTCTTCAGGTTTATAATAATCGGTTTTCCGGTCGGATTCCCGATGGCTTGTGGACTTCTCCAAATATAATGACGTTGTGGGTAAGCGATAATTTTTTTACAGGTCAGTTACCGGCAAAAATTTCGTCAAATTTAACCCTAATTGAAATCAGCAACAACAATTTCTCTGGCGAGATTCCAGCCAGTGTGTCTTCTTGGAACAATTTGAAGGAGTTGAAAGCAAGCAATAATTTGTTCGCCGGTACAATTCCTCAAGAACTCACTTCTCTTCCATTTCTGGAGACACTTTTACTCGATCAGAATCACCTTTCTGGGAGAATTCCATTGAACATTATCTCCTGGACGTCGCTATCATCTTTAAATCTCAGTCATAACCAACTCCATGGCCAAATTCCTGCTGGACTGGGATTTTTACCTGTACTCACAATGTTGGACTTGTCGGAAAATGATCTTTCTGGTCAAATTCCGGCAGAAGTTGGAAAGTTGAGGCTAACTTCTCTCAATCTCTCCTCCAATCTCCTCACCGGAAAACTCCCCGGTCCATTTGAAAATGGAGCTTTTGAGAACAGCTTCTTGAACAATCCTGGCCTTTGTACAAATAACCCATCACTAGGCCTCCAAACTTGTAGATCTAATCCAAGAAATACCCGCAAAATTTTCTCCCAGTTCATTATTGTTGTCACAAGCATTGCGTCTGTGGTTCTTGTAGCGGCTCTCCTTTTCTCTCTCTATCTCATCAAAAATTTTACAAATAAAAAGTGCGGGTTAGATACGTGGAAGCTCACTTCTTTCCAAAAACTCACATTCACTGAATCCACCATTTTGTCAAGTTTAACCGACAATAACACAATCGGAAGTGGCGGGTCTGGGAAAGTATACCGAGTAGCAATTAATAGTTCAGGCGAATCGGTTGTGGTTAAGAGGATATGGACCAACAAGAAACTGGACCATCATTTGGAGAAACAATTTAATTCTGAAGTTGAGATACTAGGCACAATTCGACACCCCAACATAGTGAAACTAATGTGCTGCATTTCACGTGAGAAATCGAAGCTCCTTGTGTACCCGTATTAA

Network for GWHGAAZE015408

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00560.34	LRR_1	122	134	0.89
PF00560.34	LRR_1	533	554	1.2
PF00069.26	Pkinase	650	727	6.90E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.086
	SRR3591707	mature leaf	0.468
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.038
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.084
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.080
SRP173429	SRR8316895	Juvenile bud stage	0.040
	SRR8316896	Juvenile bud stage	0.014
	SRR8316897	Juvenile bud stage	0.160
	SRR8316894	Third green stage	0.031
	SRR8316900	Third green stage	0.107
	SRR8316901	Third green stage	0.082
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.047
	SRR8316903	Complete white stage	0.087
	SRR8316902	Silver flowering stage	0.273
	SRR8316904	Silver flowering stage	0.112
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.256
	SRR8316907	Gold flowering stage	0.123
	SRR8316908	Gold flowering stage	0.312
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.022
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.125
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.042
	CNS0095595	Whole white alabastrum(diploid) 2	0.063
	CNS0095596	Whole white alabastrum(diploid) 3	0.043
	CNS0095597	Whole white alabastrum(diploid) 4	0.078
	CNS0095598	Silvery flower (diploied) 1	0.075
	CNS0095599	Silvery flower (diploied) 2	0.144
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.062
	CNS0095602	Golden flower (diploid) 2	0.209
	CNS0095603	Golden flower (diploid) 3	0.104
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.051
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.030
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.023
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.064
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.003
	CRR073300	Leaf 1	0.008
	CRR073301	Leaf 2	0.066
	CRR073302	Leaf 3	0.090
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.060
	CRR073313	Silver flowering 2	0.034
	CRR073314	Silver flowering 3	0.054
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.104
	CRR073317	Gold flowering 3	0.135
	CRR073318	Tawny withering 1	0.046
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.031