Gene detail

Detail information of GWHGAAZE015406

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011078243.1	PREDICTED: receptor-like protein kinase HSL1 [Sesamum indicum]
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|A0A067FTN8\|A0A067FTN8_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO66581.1}
TAIR10	AT5G25930.1	Protein kinase family protein with leucine-rich repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	38158132	38163074	-
GWHAAZE00000004	mRNA	38158132	38163074	-
GWHAAZE00000004	exon	38158132	38158496	-
GWHAAZE00000004	exon	38160452	38163074	-
GWHAAZE00000004	CDS	38160452	38163074	-
GWHAAZE00000004	CDS	38158132	38158496	-

Transcript Sequence
>GWHTAAZE015422 ATGACGAAAACACCCCCACCATCTCTCCTATTCATCTCTTTCCTTCTCTGCTTCATCCTACCTTTCCATGTAAACTCCCAAACTATGAGTGACCAAGAACAAGCCATCCTTCTCAGCCTAAAACAATATTGGTCCAATCCATCATCAATCAACCACTGGGCCCCATCATCCAATTCCACCGACCACTGTACCTGGCCGGAGATCACCTGCACCGGCGGTTCCGTAACCGGAATCACACTCGTCAATATAGGCATTGCCGGAGATATCCCACCGTTCATTTGTGACCTCAAAAACCTCACCACTATCAATCTCTCGTACAATGAAATCCCCGGTCCTTTCCCGACCGTTCTCTATAACTGTTCCAATCTTCAATACTTAGACCTCTCTCAAAACTTTTTTGTAGGCCGGATTCCGGTCGACATTGACCGGTTATCTCCTCGGCTTCAGTACCTCAGCCTCACCGCCAACAACTTCACCGGCGACATTCCGGCAGCCATTGCCCGATTCCCGGAGCTCACCACTCTTTCTCTATCTCTAAATTTGTTTAATGGCTCATTCCCGCCAGAAATCGGGAACTTATCGAATCTTGAAGTTCTTGAATTGGGCTATAACGGGTTTACTCCCTCCACGATTCCGGGGAGTTTTGCGAATTTATCAAAGCTGAGAAGGCTATACATGGCGGTATCAATGCTGACCGCAGAAATCCCGGAAAGTATCGGAAGCTTGACCGCCCTCGAGTTCATTGATTTATCTGAAAATGATTTGAGTGGTAATATTCCAAGAGGGTTATTCTTGTCGAAGAACTTAACTGAGATATATCTTTACAGTAACAGGTTGACGGGGTCGATTCCTCAATCTGTTGAAGCCTTGAATTTGAAGATAATTGATCTATCTGCAAATTATTTGGCCGGGCCTATACCAGTAGGCTTCGGAAATCAGACGAAACTAACGAATTTGAGCCTGTTCTACAATAAATTATCCGGCGAAGTTCCAGTGAGTATTGGCCGGTTGCCAGAGCTGAAAAATGTCCGTTTGTTTGACAATAATCTGAGTGGAAGTATACCGCCAGACTTTGGGCGATTTTCGAAGCTCATAATCTTTGAAGTTAACGACAACCAATTTGTCGGAACGTTGCCAGAAAGTTTATGCGTCGGTGGGGTATTGGCAGGTGCTATTGCGTCTGACAACAATCTTAGTGGCGAAATCCCAAAATCACTTGGGAATTGTAGTAGTTTGTTGATTCTTCAGGTTTATAATAATCGGTTTTCCGGTCGGATTCCCGACGGTTTGTGGACTTCTCCAAATATAATGACGTTGTGGGTAAGCGATAATTTTTTTACAGGTCAGTTACCGGTAAAAATTTCATCGAATTTAACCCTAATTGAAATCAGCAACAACAATTTCTCTGGCGAGATTCCGGCCAGTGTGTCTTCTTGGAACAATTTGAAGGAGTTGAAAGCAAGCAATAATTTGTTCGCAGGTACAATTCCTCAAGAACTCACTTCTCTTCCATTTCTGGAGACACTTTTGCTAGATAGGAATCAACTTTCCGGGCAAATTCCGTTGAATATTATCTCCTGGACATCGCTATCATCATTAAATCTCAGTCATAACCAACTCCGTGGCCAAATTCCTGCCGGACTGGGATTTTTACCTGTACTCACAGAGTTGGACTTGTCGGAAAATGATCTTTCTGGTCAAATTCCGGCGGAAGTTGGAAAGTTGAGGCCAACTTCTCTCAATCTCTCCTCCAATCTCCTCACCGGAAAAGTCCCTGGTCCATTCGAAAACAGAGCTTTCGAAAACAGCTTCTTGAACAATCCTGGCCTTTGTACAGATAACCCATCACTAGGCCTCCAAACTTGCCTATCCAATCCAAGAAATACCCGCAGAATTTCCTCCCAGTTCATAATTGTTGTCACAAGCATTGCGTTTATGGTTCTCATAGCGGCTCTCCTTTTCTCTTTCTATCTCATCAAAAATTTTAGAAAGGAAAAGCGCGGGTTAGAAACGTGGAAGCTCACTTCTTTCCAAAGACTCAGTTTCACTGAATCCACCATTTTGTCGAGTTTGACAGACAATAACACAATCGGAAGTGGCGGGTCTGGGAAAGTATACCGAGTAGCAATTAACCGTTCAGGTGAATCGGTCGCGGTTAAGAGGATATGGACCAACATGAAACTGGACCATCATTTGGAGAAACAATTTAATTCCGAAGTTGAGATACTAAGCACAATTCGACACTCCAACATAGTGAAACTAATGTGCTGCATTTCAAGTGAGAAATCAAAGCTCCTAGTGTACCCGTATTTTGAAAACCGGAGTTTGGATCAGTGGCTTCATGGGAAGGAAAGATCATCGAGTGGCTCGGCCTCGGTGCACCATGTGGTCTTGGACTGGCCTAAGAGGCTGCAGATCGCAGTGGGGGCAGCTCGAGGATTGTGCTACATGCACCACGATTGCTCACCTCCGATCATTCACCGGGACGTCAAATCAAGCAACATACTGTTGGATTCAGAATTCAATGCGAAAATTGCGGATTTCGGCCTAGCCCGGATCTTGATCAACGATGGGCATAATAAAATGTCAGCTGTGGCCGGATCTTTCGGTTACATAGCTCCCGAATATGCAAAAACAGCAAGAGTGAATGAAAAGATAGATGTGTATAGCTTCGGGGTGGTCCTACTAGAGCTAGTGACAGGAAAAGAAGCAAATAAGGGAGGTGAGTATACCAATCTAGCCGAATGGGCATGGCAACACATTCAAGAAGGGTACCCCATAACCGATATCTTGCACCCCGACATCAAAGAGCCTTGTTACTTGGATGAGATAATTAGCGTTTTTAAACTCGGGATCAATTGTACCGAAAAACTGCCCTCGACTAGGCCTAGCATGAAGGAGGTTAGCCAAATTTTGCTTCGGTGTAGCCCAACACCTTCATTTGAGGAGAAGAATGCTGCAAGTGAGGTGGATTTTCTTTCTTCTTAA

Network for GWHGAAZE015406

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00560.34	LRR_1	122	141	1.7
PF13855.7	LRR_8	146	205	7.40E-07
PF00069.26	Pkinase	693	970	7.70E-46

Protein Sequence

>GWHPAAZE015414
MTKTPPPSLLFISFLLCFILPFHVNSQTMSDQEQAILLSLKQYWSNPSSINHWAPSSNSTDHCTWPEITCTGGSVTGITLVNIGIAGDIPPFICDLKNLTTINLSYNEIPGPFPTVLYNCSNLQYLDLSQNFFVGRIPVDIDRLSPRLQYLSLTANNFTGDIPAAIARFPELTTLSLSLNLFNGSFPPEIGNLSNLEVLELGYNGFTPSTIPGSFANLSKLRRLYMAVSMLTAEIPESIGSLTALEFIDLSENDLSGNIPRGLFLSKNLTEIYLYSNRLTGSIPQSVEALNLKIIDLSANYLAGPIPVGFGNQTKLTNLSLFYNKLSGEVPVSIGRLPELKNVRLFDNNLSGSIPPDFGRFSKLIIFEVNDNQFVGTLPESLCVGGVLAGAIASDNNLSGEIPKSLGNCSSLLILQVYNNRFSGRIPDGLWTSPNIMTLWVSDNFFTGQLPVKISSNLTLIEISNNNFSGEIPASVSSWNNLKELKASNNLFAGTIPQELTSLPFLETLLLDRNQLSGQIPLNIISWTSLSSLNLSHNQLRGQIPAGLGFLPVLTELDLSENDLSGQIPAEVGKLRPTSLNLSSNLLTGKVPGPFENRAFENSFLNNPGLCTDNPSLGLQTCLSNPRNTRRISSQFIIVVTSIAFMVLIAALLFSFYLIKNFRKEKRGLETWKLTSFQRLSFTESTILSSLTDNNTIGSGGSGKVYRVAINRSGESVAVKRIWTNMKLDHHLEKQFNSEVEILSTIRHSNIVKLMCCISSEKSKLLVYPYFENRSLDQWLHGKERSSSGSASVHHVVLDWPKRLQIAVGAARGLCYMHHDCSPPIIHRDVKSSNILLDSEFNAKIADFGLARILINDGHNKMSAVAGSFGYIAPEYAKTARVNEKIDVYSFGVVLLELVTGKEANKGGEYTNLAEWAWQHIQEGYPITDILHPDIKEPCYLDEIISVFKLGINCTEKLPSTRPSMKEVSQILLRCSPTPSFEEKNAASEVDFLSS

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.278
	SRR3591706	second leaf	0.461
	SRR3591707	mature leaf	1.061
	SRR3591708	Shoot apex	0.198
	SRR3591709	Stem	1.797
	SRR3591710	White floral bud	0.130
	SRR3591711	White flower	1.006
	SRR3591712	Green floral bud	0.127
	SRR3591713	Yellow flower	1.325
SRP173429	SRR8316895	Juvenile bud stage	0.007
	SRR8316896	Juvenile bud stage	0.031
	SRR8316897	Juvenile bud stage	0.053
	SRR8316894	Third green stage	0.042
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.061
	SRR8316898	Complete white stage	0.007
	SRR8316899	Complete white stage	0.085
	SRR8316903	Complete white stage	0.233
	SRR8316902	Silver flowering stage	0.218
	SRR8316904	Silver flowering stage	0.273
	SRR8316905	Silver flowering stage	0.114
	SRR8316906	Gold flowering stage	1.267
	SRR8316907	Gold flowering stage	0.749
	SRR8316908	Gold flowering stage	3.200
SRP132670	SRR6706286	Control	0.117
	SRR6706287	Light intensity 50%	0.120
	SRR6706288	Light intensity 20%	0.071
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.077
	CNS0095593	Slightly white alabastrum(diploid) 2	0.111
	CNS0095594	Slightly white alabastrum(diploid) 3	0.007
	CNS0095595	Whole white alabastrum(diploid) 2	0.076
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.092
	CNS0095598	Silvery flower (diploied) 1	0.153
	CNS0095599	Silvery flower (diploied) 2	0.093
	CNS0095600	Silvery flower (diploied) 3	0.201
	CNS0095601	Golden flower (diploid) 1	0.181
	CNS0095602	Golden flower (diploid) 2	0.478
	CNS0095603	Golden flower (diploid) 3	0.434
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.049
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.008
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.023
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.057
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.094
	CNS0095610	Silvery flower (tetraploid) 1	0.306
	CNS0095611	Silvery flower (tetraploid) 2	0.093
	CNS0095612	Silvery flower (tetraploid) 3	0.145
	CNS0095613	Golden flower (tetraploid) 1	0.576
	CNS0095614	Golden flower (tetraploid) 2	0.938
	CNS0095615	Golden flower (tetraploid) 3	0.597
CRA001975	CRR073297	Stem 1	0.063
	CRR073298	Stem 2	0.155
	CRR073299	Stem 3	0.021
	CRR073300	Leaf 1	0.022
	CRR073301	Leaf 2	0.099
	CRR073302	Leaf 3	0.054
	CRR073303	Juvenile bud 1	0.065
	CRR073304	Juvenile bud 2	0.089
	CRR073305	Juvenile bud 3	0.099
	CRR073306	Third green 1	0.078
	CRR073307	Third green 2	0.030
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.099
	CRR073310	Second white 2	0.240
	CRR073311	Second white 3	0.216
	CRR073312	Silver flowering 1	1.084
	CRR073313	Silver flowering 2	0.653
	CRR073314	Silver flowering 3	1.079
	CRR073315	Gold flowering 1	0.119
	CRR073316	Gold flowering 2	0.484
	CRR073317	Gold flowering 3	0.345
	CRR073318	Tawny withering 1	0.658
	CRR073319	Tawny withering 2	1.113
	CRR073320	Tawny withering 3	0.323