Gene detail

Detail information of GWHGAAZE015399

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011078243.1	PREDICTED: receptor-like protein kinase HSL1 [Sesamum indicum]
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|A0A067FTN8\|A0A067FTN8_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO66581.1}
TAIR10	AT5G25930.1	Protein kinase family protein with leucine-rich repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	37707398	37712269	-
GWHAAZE00000004	mRNA	37707398	37712269	-
GWHAAZE00000004	exon	37707398	37707762	-
GWHAAZE00000004	exon	37709647	37712269	-
GWHAAZE00000004	CDS	37709647	37712269	-
GWHAAZE00000004	CDS	37707398	37707762	-

Transcript Sequence
>GWHTAAZE015415 ATGACGAAAACACCCCCACCATCTCTCCTATTCATCTCTTTCCTTCTCTGCTTCATCCTACCTTTCCATGTAAACTCCCAAACTATGAGTGACCAAGAACAAGCAATCCTACTCAGCCTAAAACAATATTGGTCCAATCCATCATCAATCAACCACTGGGCCCCATCATCCAATTCCACCGACCACTGTACCTGGCCGGAGATCACCTGCACCGGCGGTTCCGTAACCGGAATCATACTCGTCAATATAGGCATTGCCGGAGATATCCCACCGTTCATTTGTGACCTCAAAAACCTCACCACTATCAATCTCTCGTACAATGAAATCCCCGGTCCTTTCCCGACCGTTCTCTATAACTGTTCCAATCTTCAATACTTAGACCTCTCTCAAAACTTTTTTGTAGGCCGGATTCCGGTCGACATTGACCGGTTATCTCCTCGGCTTCAGTACCTCAGCCTCACCGCCAACAACTTCACCGGCGACATTCCGGCGGCCATTGCCCGATTCCCGGAGCTCACCACTCTTTCTCTATCTCTAAATTTGTTTAATGGCTCGTTCCCGCCAGAAATCGGGAACTTATCGAATCTTGAAGTTCTTGAATTGGGCTACAACGGGTTTACTCCCTCCACGATTCCGGGGAGTTTTGCGAATTTATCAAAGCTGAAAAGGCTGTACATGGCGGTATCAATGCTGACCGCAGAAATCCCGGAAAGTATCGGAAGCTTGACCGCCCTCGAGTTCATTGATTTATCTGAAAATGACTTGAGTGGTAATATTCCAAGAGGGTTATTCTTGTCGAAGAACTTAACTGAGATATATCTTTACAGTAACAGGTTGACGGGGTCGATTCCTCAATCTGTTGAAGCCTTGAATTTGAAGATAATTGATCTATCTGCAAATTATTTGGCCGGGCCTATACCAGTAGGCTTCGGAAATCAGACGAAACTAACGAATTTGAGCCTGTTCTACAATAAATTATCCGGCGAAGTTCCAGTGAGTATTGGCCGGTTGCCAGAGCTGAAAAATGTCCGTTTGTTTGACAATAATCTGAGTGGAAGTATACCGCCAGACTTTGGGCGATTTTCGAAGCTCATAATCTTTGAAGTTAACGACAACCAATTTGTCGGAACGTTGCCAGAAAGTTTATGCGTCGGTGGGGTATTGGCAGGTGCTATTGCGTCTGACAACAATCTTAGTGGCGAAATCCCAAAATCACTTGGGAATTGTAGTAGTTTGTTGATTCTTCAGGTTTATAATAATCGGTTTTCCGGTCGGATTCCCGACGGTTTGTGGACTTCTCCAAATATAATGACGTTGTGGGTAAGCGATAATTTTTTTACAGGTCAGTTACCGGTAAAAATTTCGTCGAATTTAACCCTAATTGAAATCAGCAACAACAATTTCTCTGGCGAGATTCCGGCCGGTGTGTCTTCTTGGAACAATTTGAAGGTGTTGAAAGCAAGCAATAATTTGTTCGCAGGTACAATTCCTCAAGAACTCACCTCTCTTCCATTTCTGGAGACACTTTTGCTAGATAGGAATCAACTTTCCGGGCAAATTCCGTTGAATATTATCTCCTGGACATCGCTATCATCATTAAATCTCAGTCATAACCAACTCCATGGGCAAATTCCTGCCGGACTGGGATTTTTACCCGTACTCACAGAGTTGGACTTGTCGGAAAATGATCTTTCTGGTCAAATTCCGGCGGAAGTTGGAAAGTTGAGGCCAACTTCTCTCAATCTCTCCTCCAATCTCCTCACCGGAAAAGTCCCTGGTCCATTCGAAAACAGAGCTTTCGAAAACAGCTTCTTGAACAATCCTGGCCTTTGTACAGATAACCCATCACTAGGCCTCCAAACTTGCCTATCCAATCCAAGAAATACCCGCAGAATTTCCTCCCAGTTCATTATTGTTGTCTCAAGCATTGCGTTTGTGGTTCTCATAGTGGCTCTCCTTTTCTCTCTTTATCTCATCAAAAATTTTAGAAAGGAAAAGTGCGGGTTAGAAACGTGGAAGCTCACTTCTTTCCAAAGACTCAGTTTCACTGAATCCACCATTTTGTCGAGTTTGACAGACAATAACACAATCGGAAGTGGCGGGTCTGGGAAGGTATACCGAGTAGCAATTAACCGTTCAGGTGAATCGGTCGCGGTTAAGAGGATATGGACCAACATGAAACTGGACCATCATTTGGAGAAACAATTTAATTCCGAAGTTGAGATACTAAGCACAATTCGACACTCCAACATAGTGAAACTGATGTGCTGCATTTCAAGTGAGAAATCAAAGCTCCTAGTGTACCCGTATTTTGAAAACCGGAGTTTGGATCAGTGGCTTCATGGGAAGGAAAGATCATCGAGTGGCTCGGCCTCGGTGCACCATGTGGTCTTGGACTGGCCTAAGAGGCTGCAGATCGCAGTGGGGGCAGCTCGAGGATTGTGTTACATGCACCACGATTGCTCACCTCCGATCATTCACCGGGACGTCAAATCAAGCAACATACTGTTGGATTCAGAATTCAATGCAAAAATTGCAGATTTCGGTCTAGCCCGGATCTTGATCAACGATGGGCATAATAAAATGTCAGCTGTGGCCGGATCTTTCGGTTACATAGCTCCCGAATATGCAAAAACAGCAATAGTGAATGAAAAGATAGATGTGTATAGCTTCGGGGTGGTCTTACTAGAGCTAGTGACAGGAAAAGAAGCAAATAAGGGAGGTGAGTATACCAATCTAGCCGAATGGGCATGGCAACACATTCAAGAAGGGTACCCCATAGCCGATATCTTGGACGCTGACATCAAAGAGCCTTGTTACTTGGATAAGATAATTAGCGTTTTTAAACTCGGGATCAATTGTACCGAAAAACTGCCCTCGACTAGGCCTAGCATGAAGGAGGTTAGCCAAATTTTGCTTTGGTGTAGCCCAACACCTTCATTTGAGGAGAAGAATGCTGCAAGTGAGGTGGATTTTCTTTCTTCTTAA

Network for GWHGAAZE015399

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00560.34	LRR_1	122	141	1.7
PF13855.7	LRR_8	146	205	5.80E-07
PF00069.26	Pkinase	693	970	2.30E-45

Protein Sequence

>GWHPAAZE015407
MTKTPPPSLLFISFLLCFILPFHVNSQTMSDQEQAILLSLKQYWSNPSSINHWAPSSNSTDHCTWPEITCTGGSVTGIILVNIGIAGDIPPFICDLKNLTTINLSYNEIPGPFPTVLYNCSNLQYLDLSQNFFVGRIPVDIDRLSPRLQYLSLTANNFTGDIPAAIARFPELTTLSLSLNLFNGSFPPEIGNLSNLEVLELGYNGFTPSTIPGSFANLSKLKRLYMAVSMLTAEIPESIGSLTALEFIDLSENDLSGNIPRGLFLSKNLTEIYLYSNRLTGSIPQSVEALNLKIIDLSANYLAGPIPVGFGNQTKLTNLSLFYNKLSGEVPVSIGRLPELKNVRLFDNNLSGSIPPDFGRFSKLIIFEVNDNQFVGTLPESLCVGGVLAGAIASDNNLSGEIPKSLGNCSSLLILQVYNNRFSGRIPDGLWTSPNIMTLWVSDNFFTGQLPVKISSNLTLIEISNNNFSGEIPAGVSSWNNLKVLKASNNLFAGTIPQELTSLPFLETLLLDRNQLSGQIPLNIISWTSLSSLNLSHNQLHGQIPAGLGFLPVLTELDLSENDLSGQIPAEVGKLRPTSLNLSSNLLTGKVPGPFENRAFENSFLNNPGLCTDNPSLGLQTCLSNPRNTRRISSQFIIVVSSIAFVVLIVALLFSLYLIKNFRKEKCGLETWKLTSFQRLSFTESTILSSLTDNNTIGSGGSGKVYRVAINRSGESVAVKRIWTNMKLDHHLEKQFNSEVEILSTIRHSNIVKLMCCISSEKSKLLVYPYFENRSLDQWLHGKERSSSGSASVHHVVLDWPKRLQIAVGAARGLCYMHHDCSPPIIHRDVKSSNILLDSEFNAKIADFGLARILINDGHNKMSAVAGSFGYIAPEYAKTAIVNEKIDVYSFGVVLLELVTGKEANKGGEYTNLAEWAWQHIQEGYPIADILDADIKEPCYLDKIISVFKLGINCTEKLPSTRPSMKEVSQILLWCSPTPSFEEKNAASEVDFLSS

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.121
	SRR3591706	second leaf	0.208
	SRR3591707	mature leaf	0.369
	SRR3591708	Shoot apex	0.048
	SRR3591709	Stem	0.589
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.390
	SRR3591712	Green floral bud	0.046
	SRR3591713	Yellow flower	0.252
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.037
	SRR8316897	Juvenile bud stage	0.004
	SRR8316894	Third green stage	0.022
	SRR8316900	Third green stage	0.007
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.051
	SRR8316903	Complete white stage	0.014
	SRR8316902	Silver flowering stage	0.033
	SRR8316904	Silver flowering stage	0.021
	SRR8316905	Silver flowering stage	0.011
	SRR8316906	Gold flowering stage	0.014
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.587
SRP132670	SRR6706286	Control	0.019
	SRR6706287	Light intensity 50%	0.009
	SRR6706288	Light intensity 20%	0.008
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.014
	CNS0095593	Slightly white alabastrum(diploid) 2	0.040
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.029
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.030
	CNS0095601	Golden flower (diploid) 1	0.023
	CNS0095602	Golden flower (diploid) 2	0.100
	CNS0095603	Golden flower (diploid) 3	0.043
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.018
	CNS0095611	Silvery flower (tetraploid) 2	0.027
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.012
	CNS0095614	Golden flower (tetraploid) 2	0.005
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.055
	CRR073298	Stem 2	0.007
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.004
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.031
	CRR073305	Juvenile bud 3	0.009
	CRR073306	Third green 1	0.030
	CRR073307	Third green 2	0.007
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.002
	CRR073310	Second white 2	0.006
	CRR073311	Second white 3	0.013
	CRR073312	Silver flowering 1	0.019
	CRR073313	Silver flowering 2	0.006
	CRR073314	Silver flowering 3	0.091
	CRR073315	Gold flowering 1	0.106
	CRR073316	Gold flowering 2	0.102
	CRR073317	Gold flowering 3	0.077
	CRR073318	Tawny withering 1	0.137
	CRR073319	Tawny withering 2	0.081
	CRR073320	Tawny withering 3	0.450