Gene detail

Detail information of GWHGAAZE015383

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011083560.1	PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Sesamum indicum]
trEMBL	tr\|V5RAL0\|V5RAL0_CAMSI	Arginyl-tRNA synthetase-like protein {ECO:0000313\|EMBL:AHB32107.1}
TAIR10	AT4G26300.1	Arginyl-tRNA synthetase, class Ic

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	37175048	37184542	-
GWHAAZE00000004	mRNA	37175048	37184542	-
GWHAAZE00000004	exon	37184415	37184542	-
GWHAAZE00000004	exon	37184263	37184338	-
GWHAAZE00000004	exon	37184050	37184151	-
GWHAAZE00000004	exon	37183752	37183967	-
GWHAAZE00000004	exon	37183101	37183181	-
GWHAAZE00000004	exon	37182484	37182567	-
GWHAAZE00000004	exon	37182230	37182334	-
GWHAAZE00000004	exon	37180844	37181043	-
GWHAAZE00000004	exon	37179715	37179799	-
GWHAAZE00000004	exon	37179419	37179605	-
GWHAAZE00000004	exon	37178591	37178660	-
GWHAAZE00000004	exon	37177656	37177725	-
GWHAAZE00000004	exon	37177446	37177535	-
GWHAAZE00000004	exon	37176569	37176637	-
GWHAAZE00000004	exon	37176329	37176427	-
GWHAAZE00000004	exon	37175048	37175158	-
GWHAAZE00000004	CDS	37184415	37184542	-
GWHAAZE00000004	CDS	37184263	37184338	-
GWHAAZE00000004	CDS	37184050	37184151	-
GWHAAZE00000004	CDS	37183752	37183967	-
GWHAAZE00000004	CDS	37183101	37183181	-
GWHAAZE00000004	CDS	37182484	37182567	-
GWHAAZE00000004	CDS	37182230	37182334	-
GWHAAZE00000004	CDS	37180844	37181043	-
GWHAAZE00000004	CDS	37179715	37179799	-
GWHAAZE00000004	CDS	37179419	37179605	-
GWHAAZE00000004	CDS	37178591	37178660	-
GWHAAZE00000004	CDS	37177656	37177725	-
GWHAAZE00000004	CDS	37177446	37177535	-
GWHAAZE00000004	CDS	37176569	37176637	-
GWHAAZE00000004	CDS	37176329	37176427	-
GWHAAZE00000004	CDS	37175048	37175158	-

Transcript Sequence
>GWHTAAZE015399 ACATACGGGGAGCCTAAAGCAAAAATTAGCAAACCTTTTGAGGCATCAATCAGAGCAACAGTCCCTGATGAGTTAGACGTAGAGCCTTTGATTGCTGCATGCAGTCCAAAATTTGGTGATTACCAATGCAACAATGCTATGAGCTTATGGACAAAAGTAAAACAAAAGAAGACAGAATTTAAAGGCCCTCAACCTATTGGACGGGCCCTTATGCAAAATCTTCCTCCATCAGAAATTATAGAATCATGCTCCATAGCTGGACCTGGTTTCGTGAATATTGTATTATCGAAGGACTGGATAGCAAAGACCATCCACAAGATGCTAAATGATGGTATCGAGACAATGGCGCCCAGGCTTCCTGTCAAAAGGGCAGTAGTTGACTTTTCGTCACCGAATATAGCAAAAGAAATGCATGTTGGTCATTTAAGATCTACTATTATTGGAGACACACTAGCCCGAATGCTTGAGTTTTCAAACGTTGATGTTCTTCGAAGAAATCATGTTGGTGATTGGGGCACACAGTTTGGTATGCTAATTGAGTTCCTGTTTGAAAAGTTCCCAAACTGGGAAGATGCTAATGATCTAGCCATCGAAAATCTACAGGCCTTTTACAAGGCCGCCAAGCAAAGATTTGACAGTGATCCTGCTTTCAAGGAGAGAGCTCAACAGGCGGTTGTCAGTCTTCAGGCTGGGGTGGAGAAATATCGTACGGCATGGGCACGAATCTGTGAAATCAGTCGCAGAGAATTTGAAATAGTTTATCAACGCCTCGGAGTTCATTTAGAGGAAAAGTTATATGGCCCATCCTTTTTAGGAGAAAGCTTTTACAATCCATATATTCCTGCGGCTTTAGAGTTGTTGCAAGAGAAAGGATTGATTGAAGAAAGTGAAGGTGCCCGTGTGATCTTTATTGAAGGGAAAAAAATACCCCTTATTGTTGTGAAGAGCGATGGTGGTTATAACTATGCTTCAACTGATCTTGCAGCTCTATGGTATCGACTTAATGAAGAAAAAGCGGAGTGGATTATATATGTTACTGATGTTGGGCAAAAGGAGCATTTTGACATGTTTTTCACTGCTGCAAAACGCGCAGGTTGGCTTCCAGCTGAAGATAATAAGTATCCTAGAACAAGCCATGTGGGCTTTGGTCTTGTTCTCGGTGACGATGGAAAGAGATTTCGAACCCGTAGTACTGAAGTGGTTAAGTTGGTTGATTTACTCAATGAAGCCAAGGAGCGATGTAAAGCAGTTCTTGTTGAACGAGGTAAGGCTGATGAGTGGACTGCAGAGGAGCTTGAGCAAACTGCTGAAGCAATTGGATATGGGGCTGTTAAGTATGCTGATCTGAAGAACAATAGATCGACAAACTACACATTTAGTTACGATCAGATGCTTAATGATAAGGGAAATACTGCAGTGTACTTGCTGTATGCACATGCTCGAATCTGTTCAATCATCAGGAAATCTGGTAAAGATATAGAGGAGTTAAAGAAGGTGGGAAAGCTAGAGTTGGCTCATTCGGATGAGCGTGCATTAGGACTTCATTTGCTTCAGTTTTCTGAGGTAGTAGAAGAGGCTTGCACTAATCTGTTACCAAGCGGGCTATGTGAATACCTATATGGCTTATCTGAGTGTTTCACAAAATTTTACTCCAACTGTCAGGTTGTGGGGTCAGCAGAGGAAACAAGTAGACTGTTGCTGTGTGAGGCAACGGCTGTAGTCATGAGGAAATGCTTCCATCTACTGGGCATTACACCTGTCTACAAAATTTGA

Network for GWHGAAZE015383

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03485.17	Arg_tRNA_synt_N	9	95	3.90E-16
PF00750.20	tRNA-synt_1d	121	461	1.60E-114
PF05746.16	DALR_1	475	589	5.70E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01887	RARS, argS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006420	biological_process	arginyl-tRNA aminoacylation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0005737	cellular_component	cytoplasm
GO:0000166	molecular_function	nucleotide binding
GO:0004814	molecular_function	arginine-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.962
	SRR3591706	second leaf	45.362
	SRR3591707	mature leaf	36.000
	SRR3591708	Shoot apex	57.970
	SRR3591709	Stem	54.678
	SRR3591710	White floral bud	50.994
	SRR3591711	White flower	57.909
	SRR3591712	Green floral bud	57.382
	SRR3591713	Yellow flower	60.894
SRP173429	SRR8316895	Juvenile bud stage	31.170
	SRR8316896	Juvenile bud stage	43.963
	SRR8316897	Juvenile bud stage	24.427
	SRR8316894	Third green stage	19.607
	SRR8316900	Third green stage	52.629
	SRR8316901	Third green stage	46.472
	SRR8316898	Complete white stage	20.689
	SRR8316899	Complete white stage	66.115
	SRR8316903	Complete white stage	28.061
	SRR8316902	Silver flowering stage	19.757
	SRR8316904	Silver flowering stage	30.417
	SRR8316905	Silver flowering stage	13.078
	SRR8316906	Gold flowering stage	45.195
	SRR8316907	Gold flowering stage	42.092
	SRR8316908	Gold flowering stage	57.990
SRP132670	SRR6706286	Control	54.795
	SRR6706287	Light intensity 50%	55.134
	SRR6706288	Light intensity 20%	56.993
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.346
	CNS0095593	Slightly white alabastrum(diploid) 2	40.216
	CNS0095594	Slightly white alabastrum(diploid) 3	39.280
	CNS0095595	Whole white alabastrum(diploid) 2	31.874
	CNS0095596	Whole white alabastrum(diploid) 3	30.921
	CNS0095597	Whole white alabastrum(diploid) 4	32.168
	CNS0095598	Silvery flower (diploied) 1	29.026
	CNS0095599	Silvery flower (diploied) 2	32.344
	CNS0095600	Silvery flower (diploied) 3	42.072
	CNS0095601	Golden flower (diploid) 1	24.757
	CNS0095602	Golden flower (diploid) 2	40.589
	CNS0095603	Golden flower (diploid) 3	37.028
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.296
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.638
	CNS0095606	Slightly white alabastrum(tetraploid) 3	59.727
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.259
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.255
	CNS0095609	Whole white alabastrum(tetraploid) 3	49.420
	CNS0095610	Silvery flower (tetraploid) 1	53.523
	CNS0095611	Silvery flower (tetraploid) 2	50.934
	CNS0095612	Silvery flower (tetraploid) 3	57.484
	CNS0095613	Golden flower (tetraploid) 1	34.248
	CNS0095614	Golden flower (tetraploid) 2	43.304
	CNS0095615	Golden flower (tetraploid) 3	38.789
CRA001975	CRR073297	Stem 1	50.113
	CRR073298	Stem 2	43.708
	CRR073299	Stem 3	44.768
	CRR073300	Leaf 1	47.084
	CRR073301	Leaf 2	46.640
	CRR073302	Leaf 3	43.932
	CRR073303	Juvenile bud 1	47.008
	CRR073304	Juvenile bud 2	31.165
	CRR073305	Juvenile bud 3	43.987
	CRR073306	Third green 1	16.014
	CRR073307	Third green 2	15.020
	CRR073308	Third green 3	16.366
	CRR073309	Second white 1	17.476
	CRR073310	Second white 2	26.304
	CRR073311	Second white 3	24.123
	CRR073312	Silver flowering 1	19.516
	CRR073313	Silver flowering 2	14.662
	CRR073314	Silver flowering 3	18.232
	CRR073315	Gold flowering 1	34.374
	CRR073316	Gold flowering 2	54.580
	CRR073317	Gold flowering 3	25.279
	CRR073318	Tawny withering 1	38.184
	CRR073319	Tawny withering 2	47.600
	CRR073320	Tawny withering 3	48.901