Gene detail

Detail information of GWHGAAZE015380

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002278590.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Vitis vinifera]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A5AGK9\|A5AGK9_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN68996.1}
TAIR10	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	37078637	37081363	-
GWHAAZE00000004	mRNA	37078637	37081363	-
GWHAAZE00000004	exon	37080792	37081363	-
GWHAAZE00000004	exon	37080466	37080653	-
GWHAAZE00000004	exon	37079119	37080393	-
GWHAAZE00000004	exon	37078637	37078959	-
GWHAAZE00000004	CDS	37080792	37081363	-
GWHAAZE00000004	CDS	37080466	37080653	-
GWHAAZE00000004	CDS	37079119	37080393	-
GWHAAZE00000004	CDS	37078637	37078959	-

Transcript Sequence
>GWHTAAZE015396 ATGAATCTTGAGACCCTTCATTTATTTGGAAATCAACTCACTGGCTCGATTCCTCGAGAGATAGGCCAACTAGAGTCTCTTTATGATCTTGCATTGGACACAAACTTTCTTGAAGGACCAATTCCTTCTTCAATCAGCAATTTGAGCAACTTAGCTTTTCTCTCTCTTTTCAAGAATAAACTTTCGGGTTATATTCCTCAAGAAATGGGAAATCTTGTCAATCTTGTGAAGGTCTATATGTATATCAACAATCTCAAGGGTCAGATCCCTTCCAGTTTTGGAAACTTGAAGAATCTAGCCATCTTACATATGTTCAAAAATCAGTTATCGGGTACCATTCCCCCGAAAATAGGGATGTTAAAATCTCTCGAGAGTCTCAGCCTTCACTACAATAATCTTATTGGCTCAATCCCTCCGTCTTTGGGTGGTCTAACCTCCCTAAGCAACCTTCGTCTCGACAATAATAAACTTTCAGGCCCTATTCCAGAAGAACTAGGAAACTTGGAGTCCCTAACCAATCTTTTTTTGAACAATAATAGATTCAATGGTTCTATTCCTACTTGGCTTGGCAATGGAAGGCTTGAATATCTCGCTGTAAACAACAACCAACTCATTGGTCAAGTGCCCAAAAGCTTAAGAAACTGCTCAAGCTTAGTTAGAGTCCGCCTCCACAATAACAAGCTCACTGGAAATTTATCTGAAGTTTTTGGCATATATCCGAAATTAAAGTTCATGAATATAAGCAGTAACGAGTTTTACGGCAGTATACCAGCGGCACTTGGAACGTCTATTCAACTACATGAACTTGACCTTTCCTCAAATCATTTGGTAGGGGAGATTCCTAAGGAATTTGGGAAATTGAAGTATTTACTAAAGTTTGTTTTGAGTGATAACCAACTTTTTGGCTCTATCCCTCAAGAACTTGGGTCTCTAAGCGAGTTGTTATATCTCGATCTATCTTCTAATAAATTGAGTGGGCCCATACCAGGAGTTCTTGGGGACTGCTTGCATATGTTCCATTTGAACTTAAGCAAGAATCAATTTGGTGGGGAAATTCCATTTCAGATTACGAAGTTAGTCCAACTGTCAGAGCTCGATTTGAGTCGTAACTCACTCTCAGGGGTAATTCCGCCTCAGTTCGAAAGTTTGGAGAATTTGGTGTATATTGACATATCCTACAATGAGTTGGAGGGTCCGATACCATACAACATAGCTTTTTTGAATGCTTCTACAGACAAATTACAAGGAAACAAAGGTTTGTGTGGAAATATTACAGGATTACAATTTTGCCAGAATCCTTCAATGGTGAACAAGAGCCAGAAAGTCGTTCTTATAATCGCTCTCCCAATTTTGGGATCAATTTTGCTTCTCGGTGCATTAATCGGGCTCTTAATGGTGTATGGGCAAAGAAAGAGAAAAATGGAAGCCGAAACCCCGAGTAAAGGACATGAAGATTTATTTTCCATATTGGCGTTTGATGGAAGAGCAACGTATGATGAAATCATAACAGCCACAGAAGATTTCGACGCCCGATATTGCATTGGAAATGGAGGATTTGGAAGCGTTTATAAAGCTCTGCTCCGCTCGGGTAATATTGTAGCTGTGAAGAAGCTTCATTCGATATCCGATATGGTAGATCGAAAAGGATTTCTAAATGAGGTAAGAGCTTTGACCGAGATAAGGCACCGAAACATTGTGAAGCTTTATGGGTTTTGCTCACATGCTCGACACTCATTTTTGATATATGAATACCTTGAAAGAGGTAGCTTGGTGTCAATACTGAGTAAAGATGAAGAAGCTAAGGAATTGGATTGGACTAAAAGGGTAAATCTCATTAAGGGTGTCGCTCATGCTTTGTCTTACATGCACCATGATTGCGCATTGCCAATCGTTCATCGAGACATATCGAGCAAGAACGTATTGCTTAATTCTGGGTATGAGGCTTGTGTTTCGGATTTCGGTACTGCCAAGTTTTTAGTGCCAGACTCGTCTAATCGGAGTGGGATTGCAGGCACATATGGATATATTCCACCAGAGTTCGCTTACACGATGAAAGTAACCGAAAAGTATGATGTGCATAGTTTTGGAGTGTTAGCACTAGAAGTGATTAAAGGAAACCATCCTGGTGAATTGATCGATACTATTTCATCTTCATCGACCAAGGAGATACAACTGAAAGACATAGTCGACCAACGCCTTCCATTTCCCTCACTCGAAGTTGAGGAGAAATTGGTATGTATTATAAAAATCGCGAGAGCGTGTTTAAATGCGAATCCACACTCAAGGCCAACAATGCTTGTTGTTTCTCAGTTATTAACTTCAACAAGAAGCCACTCGGAGATTCATGTTGAGGAGTAG

Network for GWHGAAZE015380

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00560.34	LRR_1	122	144	1.9
PF13855.7	LRR_8	265	324	1.20E-06
PF13855.7	LRR_8	341	396	1.50E-06
PF07714.18	PK_Tyr_Ser-Thr	514	769	1.40E-42

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	1.075
	SRR3591707	mature leaf	4.241
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.041
	SRR3591711	White flower	0.332
	SRR3591712	Green floral bud	0.018
	SRR3591713	Yellow flower	0.047
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.059
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.076
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.011
	SRR6706287	Light intensity 50%	0.005
	SRR6706288	Light intensity 20%	0.030
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.056
	CNS0095598	Silvery flower (diploied) 1	0.489
	CNS0095599	Silvery flower (diploied) 2	0.485
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.156
	CNS0095602	Golden flower (diploid) 2	0.029
	CNS0095603	Golden flower (diploid) 3	0.004
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.002
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.035
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.019
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.003
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.845
	CRR073316	Gold flowering 2	1.507
	CRR073317	Gold flowering 3	1.670
	CRR073318	Tawny withering 1	0.362
	CRR073319	Tawny withering 2	0.448
	CRR073320	Tawny withering 3	0.034