Detail information of GWHGAAZE015257


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP33847.10hypothetical protein JCGZ_07418 [Jatropha curcas]
Swissprottr|Q38932|LCYE_ARATH0Lycopene epsilon cyclase, chloroplastic (Precursor)
trEMBLtr|A0A067KCI7|A0A067KCI7_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP33847.1}
TAIR10AT5G57030.16E-168Lycopene beta/epsilon cyclase protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2904489229057495-
GWHAAZE00000004mRNA2904489229057495-
GWHAAZE00000004exon2905720829057495-
GWHAAZE00000004exon2905117329051344-
GWHAAZE00000004exon2904985829049993-
GWHAAZE00000004exon2904960529049715-
GWHAAZE00000004exon2904938329049485-
GWHAAZE00000004exon2904788829048031-
GWHAAZE00000004exon2904725429047302-
GWHAAZE00000004exon2904677429046902-
GWHAAZE00000004exon2904636229046419-
GWHAAZE00000004exon2904489229045057-
GWHAAZE00000004CDS2905720829057495-
GWHAAZE00000004CDS2905117329051344-
GWHAAZE00000004CDS2904985829049993-
GWHAAZE00000004CDS2904960529049715-
GWHAAZE00000004CDS2904938329049485-
GWHAAZE00000004CDS2904788829048031-
GWHAAZE00000004CDS2904725429047302-
GWHAAZE00000004CDS2904677429046902-
GWHAAZE00000004CDS2904636229046419-
GWHAAZE00000004CDS2904489229045057-
Transcript Sequence

Network for GWHGAAZE015257

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05834.13Lycopene_cycl1083194.70E-78
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06444lcyE, crtL2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carotenoid biosynthesismap00906

Gene Ontology

GO term OntologyName
GO:0016117biological_processcarotenoid biosynthetic process
GO:0016705molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf40.383
SRR3591706second leaf90.816
SRR3591707mature leaf63.437
SRR3591708Shoot apex54.005
SRR3591709Stem14.180
SRR3591710White floral bud3.699
SRR3591711White flower5.296
SRR3591712Green floral bud2.217
SRR3591713Yellow flower3.202
SRP173429 SRR8316895Juvenile bud stage 9.959
SRR8316896Juvenile bud stage 9.911
SRR8316897Juvenile bud stage 5.003
SRR8316894Third green stage 3.441
SRR8316900Third green stage 4.994
SRR8316901Third green stage 3.980
SRR8316898Complete white stage 0.601
SRR8316899Complete white stage 2.525
SRR8316903Complete white stage 1.674
SRR8316902Silver flowering stage0.518
SRR8316904Silver flowering stage0.466
SRR8316905Silver flowering stage0.266
SRR8316906Gold flowering stage 0.948
SRR8316907Gold flowering stage 0.694
SRR8316908Gold flowering stage 2.215
SRP132670SRR6706286Control3.730
SRR6706287Light intensity 50%3.336
SRR6706288Light intensity 20%2.372
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.242
CNS0095593Slightly white alabastrum(diploid) 23.028
CNS0095594Slightly white alabastrum(diploid) 34.339
CNS0095595Whole white alabastrum(diploid) 23.203
CNS0095596Whole white alabastrum(diploid) 31.980
CNS0095597Whole white alabastrum(diploid) 41.714
CNS0095598Silvery flower (diploied) 116.961
CNS0095599Silvery flower (diploied) 216.144
CNS0095600Silvery flower (diploied) 35.069
CNS0095601Golden flower (diploid) 113.299
CNS0095602Golden flower (diploid) 212.711
CNS0095603Golden flower (diploid) 313.468
CNS0095604Slightly white alabastrum(tetraploid) 13.482
CNS0095605Slightly white alabastrum(tetraploid) 23.558
CNS0095606Slightly white alabastrum(tetraploid) 38.617
CNS0095607Whole white alabastrum(tetraploid) 12.484
CNS0095608Whole white alabastrum(tetraploid) 20.471
CNS0095609Whole white alabastrum(tetraploid) 33.185
CNS0095610Silvery flower (tetraploid) 15.519
CNS0095611Silvery flower (tetraploid) 29.847
CNS0095612Silvery flower (tetraploid) 32.536
CNS0095613Golden flower (tetraploid) 14.032
CNS0095614Golden flower (tetraploid) 26.248
CNS0095615Golden flower (tetraploid) 32.401
CRA001975CRR073297Stem 118.929
CRR073298Stem 216.193
CRR073299Stem 318.700
CRR073300Leaf 14.157
CRR073301Leaf 24.886
CRR073302Leaf 33.155
CRR073303Juvenile bud 12.165
CRR073304Juvenile bud 20.662
CRR073305Juvenile bud 33.822
CRR073306Third green 10.061
CRR073307Third green 20.000
CRR073308Third green 30.732
CRR073309Second white 11.629
CRR073310Second white 22.402
CRR073311Second white 31.050
CRR073312Silver flowering 12.932
CRR073313Silver flowering 22.514
CRR073314Silver flowering 33.148
CRR073315Gold flowering 177.059
CRR073316Gold flowering 2105.373
CRR073317Gold flowering 370.077
CRR073318Tawny withering 116.259
CRR073319Tawny withering 214.605
CRR073320Tawny withering 311.033