Gene detail

Detail information of GWHGAAZE015175

Functional Annotation

Database	Orthologs	Annotation
Nr	CAN68996.1	hypothetical protein VITISV_008862 [Vitis vinifera]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A5AGK9\|A5AGK9_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN68996.1}
TAIR10	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	26953528	26958051	+
GWHAAZE00000004	mRNA	26953528	26958051	+
GWHAAZE00000004	exon	26953528	26954289	+
GWHAAZE00000004	exon	26955665	26956682	+
GWHAAZE00000004	exon	26956766	26957563	+
GWHAAZE00000004	exon	26957726	26958051	+
GWHAAZE00000004	CDS	26953528	26954289	+
GWHAAZE00000004	CDS	26955665	26956682	+
GWHAAZE00000004	CDS	26956766	26957563	+
GWHAAZE00000004	CDS	26957726	26958051	+

Transcript Sequence
>GWHTAAZE015191 ATGGGTTCTTTTACTTTTAAAAAGTCCTTAATCTTCATTTTACTCTCAATCATTATAATCATAATTCTCGTTTCACCAAATGTGGCTGCTGCTGCTTCTTCTGCTTCGACTAATGAAGCAATGGCTCTCCTCCATTGGAAATCAAGCCTTTTAAGCCAAAATAAGTCCATGCAAATTTCATGGACTCTTCCTCCTAATAATGCCACCAATTCTTATCCCCATTCACGAAAAACCCCGAGACCGTGTTCTTGGCTCGGAGTTTCTTGTATTGAAGGAAGCGTAATTCGATTAAACCTTTCGATGACAGGTTTAAAAGGTACGCTGTACAACTTTTCTTTCTCATCCTTCCCGCATCTTACCTACCTTGAACTAACCAATAATGAGCTCACTGGTAGCATTCCCCCACAAATTAGTACTCTATCAAAGCTCAAGTATCTTGATTTGTCGGCCAATCTATTTTCGGGTATTATCCCACCGGAGATTGGGCTTTTAACAAATCTCGAGACCTTTTTTGTATGTGAAAATCAATTAACGGGCTTGATTCCTCAAGAAATAGGCCAACTCAAGTCTCTCTACGAACTCGCATTGTACACAAACTTTCATGAAGGACCAATTCCTTCTTCTATTGGCAATTTGAGCAACTTGGCTATTCTCTATCTATACAATAATAAAATTTCGGGCTCTATTCCTCAAGAAATAGGCCAACTAAAGTCTCTCTCTGAGCTCGACTTATCAACAAACTCTCTTGAAGGACCAATTCCTAATAAACTTTCGGGAGTTATTCCTCAAGAGATTGGACAACTAAAGTTTCTCTTTGAGCTCGATTTGTCCACAAACTCTTTTGAAGGACTAATTCCTTATTCTATAGGCAATTTGAGCCACTTGGAGATTCTTTATCTCTACCAGAATAAACTTTTGGGCTCTATTCCTCAAGAGATAGGCCAACTAAAGTCTCTCTATGACCTCTCGTTGCACACAAACTCTTTTTCTGGTCCCATCCCACAAGAACTAGGAAATTTGAAATTGCATAACCTGCAATTAAGCAAAAATGAATTATCAGGTCACTTGCCAGACAATATTTTACTTGGCGGAAAGCTTGAAAATTTATCTTTAAGCTACAACAAACTAATTGGTCAAGTACCCAAAAGCTTTAGAAACTGTAGGAGCTTATTAAGGGTCGTCCTTAACGGTAACAAGCTCACTGGAAATATATCTGAACTTTTTGGCATATATCCAAAATTAAAATTCATCAATATAAGCGATAATGAATTTTACGGGGAGATTTCAGATAATTGGAATCATAGCAAACAGTTGACAAATCTGCGGATCGCGAAGAACAACCTCTCCGGTAGTATACCAGCAACGTTTGGAAATTGTACTCAACTTCATGAACTTGATCTTTCTTCAAATCATTTAGTTGGGGAGATTCCTAAGGAATTTGGGAAACTAGAGTATTTACTGAAGTTGGTTTTAAGTGATAACCTACTTTCTGGCTATGTACCTCAAGAACTCGGGTTGCTAAGCGAGTTGTTGTATCTCGATTTGTCTGTTAATAGATTGAGTGGGCCCATACCAGGAGTTCTAGGGAACAACTTGCATATGTTTTATTTGAATTTAAGCAATAATCAATTTAGCAGGGAAATTCCAATTCAGTTTGCGAAGTTAATCCAGCTTTCAAAGCTTGATTTAAGCCATAACTCTCTCTCGGGGCTAATTCCATCCCAGTTCGAAAGTTTAGAGAATTTGCTATATATTGACATATCACATAATAAGTTGCAGGGATTACAGCTCTGCCAAAATCCTTTAATAGGGTCTAAGCATAATGTGAAAAACAGTAAGAAACTTGCTCTTATAATCGGACTCCCTATTCTAGCAGCAATTTTACTTCTCGGTGTATTCATTGGGCTCTTGATGGCGTTTGACCAAAGAAAGAGAAAAAAGGAAGCTAAAAATAAGAGAAAAAGGGAAGTCGAAAACAAGAGTAATGAACATAAAGATCTGTTCTCGATACTGGCGTTTGATGGAAGGGTAACACATGATGAAATCATAACAGCCACAGAAGATTTTGACGCCCGATATTGCATTGGAATGGGAGGATTTGGAAGCGTTTACAAAGCTCTCCTTAGCTCGGGTAATATTGTAGCAGTTAAGAAGCTTCATTCGATATCGGATATGGTTAATCGAGAAGGCTTTCTAAACGAGGTGAGAGCTTTGACCGAGATAAAGCATCGTAATATTGTAAAGCTTCTTGGATTTTGTTCACATGTTCGGCACTCATTTTTGATATACGAGTACCTTGAAAGAGGTAGCTTGGCATCAATATTAAGCAACGAAGAAGAAGCTAAGGAACTAGACTGGATCAAGAGGATAAATATCATTAAGGGTGTCGCTCATGCTTTGTCTTACATGCACCACAATTGTGCATCGCCAATCGTTCATCGAGACATATCGAGCAAGAACATATTGCTTGATTCTACATATGAGGCTAGTGTTTCAGACTTTGGCACCGCCAAGTTTCTAAATCCGGATTCATCCAATTGGAGCGCACTTGCAGGCACATATGGATATGTTGCACCAGAGTTTGCTTACACAATGAGGATAACTGAAAAGTGCGATATATATAGTTTTGGAGTGTTAGCACTAGAAGTGATTAAAGGGAACCATCCTAGTGACTTGATCAGTATTGTTTTATCTTCATCAACTGACGATATACAGTTGAAAGATATGGTTGACCAACGCCTTCCATTTCCCTCGCTCGGAGTTGAGGAGGCATTGGTATCTATTGTTAAAATCGCGAGAGTGTGTTTGCATGCAGATCCACAATCAAGGCCAACAATGCTCGTTGTTTCTCAGTTGTTATCGACTCAAACAACAGGCCTCTCAGAGATTCGTGTTGAGGAATAG

Network for GWHGAAZE015175

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	38	89	0.00087
PF13855.7	LRR_8	437	496	1.20E-06
PF13855.7	LRR_8	557	595	7.10E-08
PF00069.26	Pkinase	695	947	5.30E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.032
	SRR3591706	second leaf	0.165
	SRR3591707	mature leaf	1.900
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.392
	SRR3591710	White floral bud	0.091
	SRR3591711	White flower	0.079
	SRR3591712	Green floral bud	0.031
	SRR3591713	Yellow flower	0.094
SRP173429	SRR8316895	Juvenile bud stage	0.030
	SRR8316896	Juvenile bud stage	0.088
	SRR8316897	Juvenile bud stage	0.314
	SRR8316894	Third green stage	0.023
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.015
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.035
	SRR8316902	Silver flowering stage	0.025
	SRR8316904	Silver flowering stage	0.001
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.006
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.119
SRP132670	SRR6706286	Control	0.042
	SRR6706287	Light intensity 50%	0.104
	SRR6706288	Light intensity 20%	0.033
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.061
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.010
	CNS0095598	Silvery flower (diploied) 1	0.130
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.323
	CNS0095602	Golden flower (diploid) 2	0.013
	CNS0095603	Golden flower (diploid) 3	0.051
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.051
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.002
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.001
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.045
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.001
	CRR073307	Third green 2	0.001
	CRR073308	Third green 3	0.002
	CRR073309	Second white 1	0.051
	CRR073310	Second white 2	0.001
	CRR073311	Second white 3	0.001
	CRR073312	Silver flowering 1	0.010
	CRR073313	Silver flowering 2	0.012
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.017
	CRR073317	Gold flowering 3	0.090
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000