Gene detail

Detail information of GWHGAAZE015113

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008348615.1	0	PREDICTED: homeobox-leucine zipper protein HDG11-like [Malus domestica]
Swissprot	tr\|Q9FFI0\|HDG9_ARATH	7E-118	Homeobox-leucine zipper protein HDG9
trEMBL	tr\|V4S673\|V4S673_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR34325.1}
TAIR10	AT5G52170.1	5E-71	homeodomain GLABROUS 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	25318296	25331817	-
GWHAAZE00000004	mRNA	25318296	25331817	-
GWHAAZE00000004	exon	25331759	25331817	-
GWHAAZE00000004	exon	25328120	25328237	-
GWHAAZE00000004	exon	25327838	25328029	-
GWHAAZE00000004	exon	25327203	25327643	-
GWHAAZE00000004	exon	25327005	25327097	-
GWHAAZE00000004	exon	25319485	25319668	-
GWHAAZE00000004	exon	25319130	25319398	-
GWHAAZE00000004	exon	25318924	25319013	-
GWHAAZE00000004	exon	25318296	25318694	-
GWHAAZE00000004	CDS	25331759	25331817	-
GWHAAZE00000004	CDS	25328120	25328237	-
GWHAAZE00000004	CDS	25327838	25328029	-
GWHAAZE00000004	CDS	25327203	25327643	-
GWHAAZE00000004	CDS	25327005	25327097	-
GWHAAZE00000004	CDS	25319485	25319668	-
GWHAAZE00000004	CDS	25319130	25319398	-
GWHAAZE00000004	CDS	25318924	25319013	-
GWHAAZE00000004	CDS	25318296	25318694	-

Transcript Sequence
>GWHTAAZE015129 ATGTCTACCGGTGGGGAACAAGGGTTGTTCAACGGTGGAGTAAGGAGCTGCCGGAAGAGGTTTTTCAAGGAGTGCCCCCATCCAGATGAGAATCAAAGACGGCAACTTAGCCACGATTTAGGGCTTGAACCTAAGCAGATCAAGTTCTGGTTCCAGAACAAGAGAACGCAAACCAAGGCTCAGAATGAGCGCGCCGATAACAATGCTCTCCGTCAAGAAAATGAGAGAATTCACTGTGAAAACCTCGCGATTGCTGAGGCACTGAAGAATGTGATATGTCCAGCCTGTGGAGATCCACCAGTCGGGGAAGAAGAACGACAGCGTAATATCCAACAACTAAAAATTGAAAATGCCCTATTGAAACAAGAGCACGAGAGACTTTCTCACATGCTAGCAAACATGACTGGAAAACCTGTCACACACATTCAATCATTGTCTTCTCCTTCTTTAGGAAGTCCGTTAGATTTCCCGCCAGGTTTCCACGGTCAAGGAATCGGACACCCTCTTCTTGATCCTGTGAGCACCACTTTTCCGTACCAATTAAAGGGAATACAAGAAATGGAAAAGTCGCTCATGGTTGAGACGGCTGCTAATGCTACGAATGAGTTGATTGAGCTTTTACGAATCGATGAGCCCTTATGGGTTAAGTCCCAAAACGACGGCGAGTTGGTTCTTCATAGGGAAAGCTACAACAAACTATTCCCTAAAGCGAATCATTTCACTAGCCCAACTTCTCTAATGGAATCATCAAAAGATTCGTGTGTAGTGGCAATCCCCGGACAACAATTACTAGAAATGTTTCTTGATTCGAATAAATGGACAGATTTATTTCCAACAATTGTTCCTAAAGCTAGAACAATTGAAGCTATAGACACCGGAAATCTTAATGGTTCTCTTATTTTGGTTACTTGGGTGGAGCACGTTGAAGTGGACGATAACTCACGTACTCATCGTCTCTATAGAGATTTGATAAGTAGTGGTCACGCGTATGGAGCGAAAAGATGGATTGCGACACTAGAAAGGATGTGTGAGCGATTTGTATACACAATGGGATCAAGAACCACACCTAGTCATGAACTTGAAGGGGTAATTAACTTGCCCGAGGGTCGCATAAGCATACTGAAGCTTTGTCAAAGGATGGTGAAGGATTTTTGCGCTATGTTAAGCATGGCAGATAAACTGGATTTCCCAAACTCATATGAATCCAACAATAGTGCAGTCCGAGTTTCAGTCCGGAAGAGCAATGATGTAAGCCAGCCCCATGCTTCAATCGTTAGTGCTGCTACCTCGTTATGGCTTCCTCTGTCACGCGACACTCTCTTTAATTTCTTCAAAGACGAGAAGACGCGACCTCAGTGGGATGTGGTCTCGAGTGGACATCTAGTAAATGAAATTGCACGCATTTCATGTGGAACTAATCCAGGAAACTACGCATCTATTATCCAGCCTTTTGTTCCACATGAGAAGAACATGCTGATGCTGCAAGAGAACTACATTGACCCTTTAGGAGCTCTTGTGGTCTATGCCCCAATAGGACTACAAGCAATAACGGCGGCTATTAATGGTGAGGACACCGAAAGAACACCCGTACTTCCATCAGGGTTTACAATCTCCGGTGATGGGCACTCACTGGACAAACTAGGAAGTACCATCGGAGCTTCAACAAGTACAAGTAGCGGCAACAGTAGGCAGGGCGGTTCACTAGTCACCGTGGCCTTTCAAATATTAGTTAATGCACAATCGAGACAAATGAACACGGAGGCAATAACGACCATCAATACTCTTATTCGCTCGACTGTTCAAAAAATAAAGGCGGCTTTCAATTGCTCTGAAAATTTGGAGTGA

Network for GWHGAAZE015113

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	20	59	1.30E-12
PF01852.20	START	302	345	3.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0008289	molecular_function	lipid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.068
	SRR3591706	second leaf	0.050
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.102
	SRR3591709	Stem	0.053
	SRR3591710	White floral bud	0.231
	SRR3591711	White flower	0.268
	SRR3591712	Green floral bud	0.222
	SRR3591713	Yellow flower	0.072
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.294
	SRR8316897	Juvenile bud stage	0.041
	SRR8316894	Third green stage	0.048
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.036
	SRR8316898	Complete white stage	0.030
	SRR8316899	Complete white stage	0.067
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.021
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.042
	SRR6706287	Light intensity 50%	0.040
	SRR6706288	Light intensity 20%	0.015
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.095
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.122
	CNS0095595	Whole white alabastrum(diploid) 2	0.018
	CNS0095596	Whole white alabastrum(diploid) 3	0.157
	CNS0095597	Whole white alabastrum(diploid) 4	0.159
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.041
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.103
	CNS0095603	Golden flower (diploid) 3	0.024
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.047
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.160
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.150
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.029
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.034
	CNS0095612	Silvery flower (tetraploid) 3	0.037
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.055
	CNS0095615	Golden flower (tetraploid) 3	0.032
CRA001975	CRR073297	Stem 1	0.127
	CRR073298	Stem 2	0.205
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.112
	CRR073301	Leaf 2	0.137
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.001
	CRR073304	Juvenile bud 2	0.041
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.144
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.140
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.308
	CRR073320	Tawny withering 3	0.000