Gene detail

Detail information of GWHGAAZE015102

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP01701.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q6K973\|SUS6_ORYSJ	Sucrose synthase 6
trEMBL	tr\|A0A068TZQ1\|A0A068TZQ1_COFCA	Sucrose synthase {ECO:0000256\|RuleBase:RU280817}
TAIR10	AT4G02280.1	sucrose synthase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	25153273	25166661	+
GWHAAZE00000004	mRNA	25153273	25166661	+
GWHAAZE00000004	exon	25153273	25153509	+
GWHAAZE00000004	exon	25154638	25154792	+
GWHAAZE00000004	exon	25155015	25155207	+
GWHAAZE00000004	exon	25155305	25155423	+
GWHAAZE00000004	exon	25155969	25156185	+
GWHAAZE00000004	exon	25156309	25156404	+
GWHAAZE00000004	exon	25156965	25157081	+
GWHAAZE00000004	exon	25157174	25157340	+
GWHAAZE00000004	exon	25157508	25157732	+
GWHAAZE00000004	exon	25158742	25159308	+
GWHAAZE00000004	exon	25159853	25159991	+
GWHAAZE00000004	exon	25160075	25160188	+
GWHAAZE00000004	exon	25160655	25160678	+
GWHAAZE00000004	exon	25164050	25164166	+
GWHAAZE00000004	exon	25164273	25164343	+
GWHAAZE00000004	exon	25164692	25164995	+
GWHAAZE00000004	exon	25165410	25165699	+
GWHAAZE00000004	exon	25166601	25166661	+
GWHAAZE00000004	CDS	25153273	25153509	+
GWHAAZE00000004	CDS	25154638	25154792	+
GWHAAZE00000004	CDS	25155015	25155207	+
GWHAAZE00000004	CDS	25155305	25155423	+
GWHAAZE00000004	CDS	25155969	25156185	+
GWHAAZE00000004	CDS	25156309	25156404	+
GWHAAZE00000004	CDS	25156965	25157081	+
GWHAAZE00000004	CDS	25157174	25157340	+
GWHAAZE00000004	CDS	25157508	25157732	+
GWHAAZE00000004	CDS	25158742	25159308	+
GWHAAZE00000004	CDS	25159853	25159991	+
GWHAAZE00000004	CDS	25160075	25160188	+
GWHAAZE00000004	CDS	25160655	25160678	+
GWHAAZE00000004	CDS	25164050	25164166	+
GWHAAZE00000004	CDS	25164273	25164343	+
GWHAAZE00000004	CDS	25164692	25164995	+
GWHAAZE00000004	CDS	25165410	25165699	+
GWHAAZE00000004	CDS	25166601	25166661	+

Transcript Sequence
>GWHTAAZE015118 ATGGCTTCTTCTACGCCGGCATTGAAGCGGTCAGAATCGATAGCCGATACCTTGCCAGAGGCCTTGAGGCAGAGCAGGTACCACATGAAGAGATGCTTTGCTAAGTACATCGGGAAAGGGAAGAGGCTGATGAAGCTTCCCCAAATAATGGAGGAGATGGAGCAAGTCATTGATGATAAGGCTGAAAGGACTAGGGTGCTTGAGGGTTTGCTTGGTTACATCTTGTGCACCACTCAGGAAGCGGCTGTTGTTCCTCCACATGTTGCCTTTGCCATTAGACCAAATCCTGGATTCTGGGAATTCGTTAAAGTGAGCTCTAATGATCTATCAGTTGAGGCCATAACTGCGACAGATTATTTGAAGTTTAAAGAAATCATTGTCGATGAGAATTGGGCAAATGATGAAAATGCATTGGAAGTTGATTTTGGAGCAATGGACTTCACTACGCCTCACTTGACCTTATCTTCTTCAATAGGAAATGGAGTTAATTTAACTTCAAAGTTCCTTACTTCCAAGCTGAATGGCACTTTGACAAGTGCACAGCCCCTTGTGGATTACTTACTCTCATTATACCACCAAGGAGATAAACTTATGATAAATGAGACCCTCAACACAGCTTCAAAGCTTCAAGGGGCGCTAGTAGTAGCTGAAGCATCCCTCTCTGCGGTGGCCAAAGAAGCACCTTATGAGCGATTCGAACTGAGGTTCAAAGAGTGGGGTTTTGAGAAGGGATGGGGTGAAACTGCTGAGATTGTTAAAGAGACAATGAGGTCTCTTTCAGAGGTACTCCAAGCACCAGACCCCATTAATATGGAAAAGTTCTTTAGCCGGATCCCGACTACATTCAATGTCGTATTATTCTCTGTCCATGGTTACTTTGGCCAATCAGATGTTCTCGGATTGCCAGATACCGGTGGGCAGGTGGTTTACGTTTTGGATCAAGTGGTAGCTTTGGAAGAGGAATTGCTCCTCAGAATTAAGCAGCAAGGTCTTAATGTGAAGCCTCAGATTCTTGTGGACGCGGCAGAGAAAATTGTTGAACTAATGGAAGGGAAACCTGATCTTATCATTGGAAACTATACTGATGGGAATTTGGTGGCCTCACTCATGGCTAGCAAGCTCGGGATAACCCTGGGAACTATTGCACATGCTTTAGAGAAGACCAAGTATGAAGATTCGGACATTAAATGGAAGGAGTTAGACCCCAAGTATCACTTCTCATGCCAGTTCACTGCTGATACTATTGCAATGAACACTGCAGATTTCATCATCACAAGCACATATCAAGAAATTGCAGGAAGCAAAGATAGGCCCGGACAGTATGAAAGCCATACAGCATTTACACTTCCGGGGCTTTCCAGAGTTGTTTCGGGCATCAATGTTTTTGATCCCAAATTCAACATTGCTCCTCCCGGGGCGGACCAAACAGTCTATTTTCCTTACACGGAGAAACAAAAGCGATTCTCAACGTTCCGTCCTGCCATTGAAGAACTACTGTTTAGTAAAGTTGATAACGACGAGCACATTGGATACCTCGAAGATAGAAAAAAACCCATTATCTTCTCAATGGCAAGGCTAGACACCGTGAAGAACATCAGTGGATTAACCGAGTGGTACGGGAAGAACAAGAGGCTGAGAAACTTGGTTAATCTTGTTGTAGTTGCGGGTTTCTTTGATCCTTCTAAATCAAAAGATAGAGAAGAAATGGCCGAAATAAGGAAAATGCACACATTGATTGAAAAATACCAACTTAAGGGTCAAATAAGATGGATAGCGGCACAAACGGACCGAAACCGGAATAGTGAACTCTACAGGTGTATAGCTGATTCCAAGGGAGCTTTTGTGCAGCCTGCGCTTTATGAAGCATTTGGCCTTACGGTTATTGAGGCAATGAACTGTGGATTAGTTACCTTTGCAACCAATCAGGGCGGTCCGGCCGAAATTATTATTGACGGTGTCTCGGGTTTTCACATTGATCCCAATGATGGTGACAATTCGAGCAACAAGATTGCGGATTTTTTCCAAAAGTGCAAGGAGGATGTGGAGTATTGGAACAGGATATCAGCTGGGGGTTTAAAGCGCATATACGAATGCTACACATGGAAGATTTATGCAAACAAGGTGTTGAATATGGGGAGTATATATGGCTTTTGGAAATATATGAACAAGGACCAGAAGCAAGCGAAGCAAAGATATATCGAAATGTTCTATAATCTCCACTACAGAAATTTGGTAAAGAATGTGCCTACTCCAACTACTGAAACTCAAGCTATAGTTCCAAAGGAAACACCAAAACCACAGCCCTCACAAAGGCATGTTACTCGAAACTCCTCAATTTTATACACAGCGCACCCAGTCACGGCTGCAAAGGTGGTCGAAATTGTAGATCGTTATGACGAGGACTGTGTCCCTTCATCGGATAGGAGTAATATGCTTGGCTACATTAAAAGCACCAAAAGTAATAAAACATGTATCAGGAATTTGATTGTACCAAAGAAAATGAGGAGTCCAATTTATATATATTATCAGCTTGACAACTTCTACCAGAACCACCGTAGATACGTCAAAAGTAGAAGCGACAAGCAATTGCGTGACACAAAATTCGAGGGTGAAACAATGGACTGCAAACCAATAGCTACAGTGGGCAAGGAAAATAAACCGATTGTTCCTTGTGGCCTCATTGCATGGAGTTTGTTTAACGACACGTACGGGTTTAAAGTGAAAGAAAAAGCTCTAGAAGTTGATAAAACGAACATAGCGTGGACAAGTGATAAATATTATAAATTTGGGGATGATGTCTACCCTAAAAATTTCCAAAGTCAAGATCTGATTGGGGGCGCAAAACTCAATGGGAGTGTGCCTTTGAGTAAGCAAGAGGATCTTATCGTTTGGATGCGAACTGCGGCGTTGCCAACTTTCAGGAAGCTTTATGGGAAGATAAATGTCGATCTTGAACCTAATGACAAGATTACAGTTACAATACACAACAACTATAACACGTACGAATTTGAGGGCCAGAAGGTGCTGATTCTTTCGACTGCAAGTTGGTTTGGTGGAAAAAATGATTTTCTTGGCAGAGCATACCTTAGTATTGGAGGAGTTAGCTTACTTATTGCGGTGATCTTCATAGTTTTGTATTTTGTCAAGCCAAGGCCACTTGGGGATCCAACCTACTTGTCATGGAACATAAATCCTAGTGGGCCCACAAACTAG

Network for GWHGAAZE015102

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00862.20	Sucrose_synth	10	339	1.30E-138
PF00862.20	Sucrose_synth	340	500	1.20E-95
PF00534.21	Glycos_transf_1	510	678	1.80E-31
PF03381.16	CDC50	787	1051	1.70E-86

Protein Sequence

>GWHPAAZE015110
MASSTPALKRSESIADTLPEALRQSRYHMKRCFAKYIGKGKRLMKLPQIMEEMEQVIDDKAERTRVLEGLLGYILCTTQEAAVVPPHVAFAIRPNPGFWEFVKVSSNDLSVEAITATDYLKFKEIIVDENWANDENALEVDFGAMDFTTPHLTLSSSIGNGVNLTSKFLTSKLNGTLTSAQPLVDYLLSLYHQGDKLMINETLNTASKLQGALVVAEASLSAVAKEAPYERFELRFKEWGFEKGWGETAEIVKETMRSLSEVLQAPDPINMEKFFSRIPTTFNVVLFSVHGYFGQSDVLGLPDTGGQVVYVLDQVVALEEELLLRIKQQGLNVKPQILVDAAEKIVELMEGKPDLIIGNYTDGNLVASLMASKLGITLGTIAHALEKTKYEDSDIKWKELDPKYHFSCQFTADTIAMNTADFIITSTYQEIAGSKDRPGQYESHTAFTLPGLSRVVSGINVFDPKFNIAPPGADQTVYFPYTEKQKRFSTFRPAIEELLFSKVDNDEHIGYLEDRKKPIIFSMARLDTVKNISGLTEWYGKNKRLRNLVNLVVVAGFFDPSKSKDREEMAEIRKMHTLIEKYQLKGQIRWIAAQTDRNRNSELYRCIADSKGAFVQPALYEAFGLTVIEAMNCGLVTFATNQGGPAEIIIDGVSGFHIDPNDGDNSSNKIADFFQKCKEDVEYWNRISAGGLKRIYECYTWKIYANKVLNMGSIYGFWKYMNKDQKQAKQRYIEMFYNLHYRNLVKNVPTPTTETQAIVPKETPKPQPSQRHVTRNSSILYTAHPVTAAKVVEIVDRYDEDCVPSSDRSNMLGYIKSTKSNKTCIRNLIVPKKMRSPIYIYYQLDNFYQNHRRYVKSRSDKQLRDTKFEGETMDCKPIATVGKENKPIVPCGLIAWSLFNDTYGFKVKEKALEVDKTNIAWTSDKYYKFGDDVYPKNFQSQDLIGGAKLNGSVPLSKQEDLIVWMRTAALPTFRKLYGKINVDLEPNDKITVTIHNNYNTYEFEGQKVLILSTASWFGGKNDFLGRAYLSIGGVSLLIAVIFIVLYFVKPRPLGDPTYLSWNINPSGPTN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00695	E2.4.1.13	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005985	biological_process	sucrose metabolic process
GO:0016020	cellular_component	membrane
GO:0016157	molecular_function	sucrose synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.656
	SRR3591706	second leaf	14.520
	SRR3591707	mature leaf	8.491
	SRR3591708	Shoot apex	11.181
	SRR3591709	Stem	27.829
	SRR3591710	White floral bud	8.556
	SRR3591711	White flower	6.300
	SRR3591712	Green floral bud	15.512
	SRR3591713	Yellow flower	1.964
SRP173429	SRR8316895	Juvenile bud stage	5.656
	SRR8316896	Juvenile bud stage	7.760
	SRR8316897	Juvenile bud stage	3.939
	SRR8316894	Third green stage	4.769
	SRR8316900	Third green stage	13.164
	SRR8316901	Third green stage	16.099
	SRR8316898	Complete white stage	0.881
	SRR8316899	Complete white stage	3.629
	SRR8316903	Complete white stage	1.719
	SRR8316902	Silver flowering stage	0.752
	SRR8316904	Silver flowering stage	1.277
	SRR8316905	Silver flowering stage	0.369
	SRR8316906	Gold flowering stage	2.032
	SRR8316907	Gold flowering stage	2.386
	SRR8316908	Gold flowering stage	1.773
SRP132670	SRR6706286	Control	6.739
	SRR6706287	Light intensity 50%	6.835
	SRR6706288	Light intensity 20%	7.304
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.591
	CNS0095593	Slightly white alabastrum(diploid) 2	18.324
	CNS0095594	Slightly white alabastrum(diploid) 3	16.535
	CNS0095595	Whole white alabastrum(diploid) 2	15.472
	CNS0095596	Whole white alabastrum(diploid) 3	16.525
	CNS0095597	Whole white alabastrum(diploid) 4	12.783
	CNS0095598	Silvery flower (diploied) 1	3.376
	CNS0095599	Silvery flower (diploied) 2	3.494
	CNS0095600	Silvery flower (diploied) 3	1.670
	CNS0095601	Golden flower (diploid) 1	2.872
	CNS0095602	Golden flower (diploid) 2	2.355
	CNS0095603	Golden flower (diploid) 3	1.602
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.221
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.443
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.493
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.188
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.801
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.790
	CNS0095610	Silvery flower (tetraploid) 1	2.663
	CNS0095611	Silvery flower (tetraploid) 2	2.192
	CNS0095612	Silvery flower (tetraploid) 3	3.020
	CNS0095613	Golden flower (tetraploid) 1	2.308
	CNS0095614	Golden flower (tetraploid) 2	1.499
	CNS0095615	Golden flower (tetraploid) 3	2.106
CRA001975	CRR073297	Stem 1	6.277
	CRR073298	Stem 2	5.847
	CRR073299	Stem 3	2.891
	CRR073300	Leaf 1	9.841
	CRR073301	Leaf 2	9.508
	CRR073302	Leaf 3	6.697
	CRR073303	Juvenile bud 1	4.359
	CRR073304	Juvenile bud 2	2.786
	CRR073305	Juvenile bud 3	3.890
	CRR073306	Third green 1	0.825
	CRR073307	Third green 2	1.664
	CRR073308	Third green 3	0.906
	CRR073309	Second white 1	0.462
	CRR073310	Second white 2	0.829
	CRR073311	Second white 3	0.615
	CRR073312	Silver flowering 1	1.248
	CRR073313	Silver flowering 2	0.638
	CRR073314	Silver flowering 3	0.751
	CRR073315	Gold flowering 1	4.046
	CRR073316	Gold flowering 2	5.832
	CRR073317	Gold flowering 3	1.842
	CRR073318	Tawny withering 1	7.331
	CRR073319	Tawny withering 2	5.732
	CRR073320	Tawny withering 3	7.919