Gene detail

Detail information of GWHGAAZE015101

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AJB84620.1	0	phytoene synthase [Camellia sinensis]
Swissprot	tr\|P08196\|PSY1_SOLLC	0	Phytoene synthase 1, chloroplastic (Precursor)
trEMBL	tr\|M1F646\|M1F646_9LAMI	0	Phytoene synthase {ECO:0000313\|EMBL:AFK66771.1}
TAIR10	AT5G17230.2	2E-174	PHYTOENE SYNTHASE

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	25122946	25126671	-
GWHAAZE00000004	mRNA	25122946	25126671	-
GWHAAZE00000004	exon	25122946	25123128	-
GWHAAZE00000004	exon	25123429	25123621	-
GWHAAZE00000004	exon	25124334	25124569	-
GWHAAZE00000004	exon	25125027	25125199	-
GWHAAZE00000004	exon	25126166	25126216	-
GWHAAZE00000004	exon	25126452	25126671	-
GWHAAZE00000004	CDS	25126452	25126671	-
GWHAAZE00000004	CDS	25126166	25126216	-
GWHAAZE00000004	CDS	25125027	25125199	-
GWHAAZE00000004	CDS	25124334	25124569	-
GWHAAZE00000004	CDS	25123429	25123621	-
GWHAAZE00000004	CDS	25122946	25123128	-

Transcript Sequence
>GWHTAAZE015117 ATGGTTGCAAATCCTAGTGGAGAAATGACTATGTCATCGGAGCAAAAGGTTTATGAGGTAGTTCAAAAGCAAGCGGCATTGGTTAAGAAGCAAATGAGGTCCACTGGCGATTTTGAGGCGAAGCCAGATGTTCTTCTTCCCGGGAATTTGAGCTTACTGAGTGAAGCTTATGATCGTTGTTGTGAAGTTTGTGCCGAATATGCCAAGACATTTTACTTGGGAACACTGCTAATGACTCCGGAGAGGCGAAGAGCTATCTGGGCAATTTATGTGTGGTGTAGGAGAACAGATGAACTTGTCGATGGGCCTAATGCTTCGCATATAACTCCTTCGGCTCTGGATAGGTGGGAATCCAGGCTCGAAAATCTTTATAAAGGCCGTCCATTCGACATGCTCGATGCTGCTTTATCAGATACAGTTGCTAAGTTTCCAGTTGACATTCAGCCATTTAGAGATATGATCGAAGGGATGAGAATGGATCTTAGGAAGTCAAGATACAAAAGCTTTGATGAGCTTTATCTTTACTGTTACTATGTGGCCGGTACAGTCGGATTAATGAGTGTCCCAGTTATGGGCATTGCACCCGAATCACAAGCAACAACAGAGAGCGTATATAACGCTGCTTTGGCACTGGGAATCGCAAATCAATTGACCAACATACTCAGAGATGTTGGAGAAGATGCCAGAAGAGGAAGGGTGTACCTACCGCAAGATGAACTTGCGCAGGCAGGGCTATCAGACGAGGACATATTTGCAGGGAAAGTAACAGAGAAATGGAGGAACTTCATGAAGAAGCAAATTGCAAGGGCAAGGATGTTCTTTGATGAAGCTGAAAAAGGAGTCACCGAACTCAGCTCAGCTAGTAGATGGCCGGTGTGGGCATCATTGTTGTTGTATCGGCAAATACTGGACGAGATTGAAGCCAATGACTACAACAACTTCACAAGGAGGGCATATGTAAGCAAACCGAAGAAAATAATAGCTCTACCGATTGCTTATGCAAAGTCACTTGTTCCACCATCAACAAAATCTTCTCCTCTTGTAACGAAGGCTTGA

Network for GWHGAAZE015101

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00494.20	SQS_PSY	67	322	1.80E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02291	crtB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0006696	biological_process	ergosterol biosynthetic process
GO:0009058	biological_process	biosynthetic process
GO:0016765	molecular_function	transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0004310	molecular_function	farnesyl-diphosphate farnesyltransferase activity
GO:0051996	molecular_function	squalene synthase activity
GO:0016740	molecular_function	transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.530
	SRR3591706	second leaf	14.625
	SRR3591707	mature leaf	9.207
	SRR3591708	Shoot apex	12.321
	SRR3591709	Stem	16.492
	SRR3591710	White floral bud	33.409
	SRR3591711	White flower	485.179
	SRR3591712	Green floral bud	28.200
	SRR3591713	Yellow flower	373.786
SRP173429	SRR8316895	Juvenile bud stage	4.602
	SRR8316896	Juvenile bud stage	11.828
	SRR8316897	Juvenile bud stage	7.312
	SRR8316894	Third green stage	5.652
	SRR8316900	Third green stage	17.037
	SRR8316901	Third green stage	16.390
	SRR8316898	Complete white stage	24.532
	SRR8316899	Complete white stage	17.160
	SRR8316903	Complete white stage	33.252
	SRR8316902	Silver flowering stage	129.245
	SRR8316904	Silver flowering stage	159.803
	SRR8316905	Silver flowering stage	86.582
	SRR8316906	Gold flowering stage	521.508
	SRR8316907	Gold flowering stage	463.139
	SRR8316908	Gold flowering stage	471.060
SRP132670	SRR6706286	Control	19.598
	SRR6706287	Light intensity 50%	18.333
	SRR6706288	Light intensity 20%	17.021
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.108
	CNS0095593	Slightly white alabastrum(diploid) 2	16.228
	CNS0095594	Slightly white alabastrum(diploid) 3	12.602
	CNS0095595	Whole white alabastrum(diploid) 2	10.250
	CNS0095596	Whole white alabastrum(diploid) 3	12.201
	CNS0095597	Whole white alabastrum(diploid) 4	21.748
	CNS0095598	Silvery flower (diploied) 1	183.324
	CNS0095599	Silvery flower (diploied) 2	227.395
	CNS0095600	Silvery flower (diploied) 3	572.894
	CNS0095601	Golden flower (diploid) 1	352.922
	CNS0095602	Golden flower (diploid) 2	514.888
	CNS0095603	Golden flower (diploid) 3	500.456
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.257
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.187
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.578
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.614
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.229
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.436
	CNS0095610	Silvery flower (tetraploid) 1	823.497
	CNS0095611	Silvery flower (tetraploid) 2	855.465
	CNS0095612	Silvery flower (tetraploid) 3	1463.790
	CNS0095613	Golden flower (tetraploid) 1	986.837
	CNS0095614	Golden flower (tetraploid) 2	869.157
	CNS0095615	Golden flower (tetraploid) 3	1183.572
CRA001975	CRR073297	Stem 1	12.064
	CRR073298	Stem 2	12.798
	CRR073299	Stem 3	11.443
	CRR073300	Leaf 1	13.460
	CRR073301	Leaf 2	14.884
	CRR073302	Leaf 3	10.324
	CRR073303	Juvenile bud 1	16.003
	CRR073304	Juvenile bud 2	8.287
	CRR073305	Juvenile bud 3	15.277
	CRR073306	Third green 1	11.389
	CRR073307	Third green 2	8.258
	CRR073308	Third green 3	9.308
	CRR073309	Second white 1	935.236
	CRR073310	Second white 2	935.412
	CRR073311	Second white 3	948.141
	CRR073312	Silver flowering 1	1112.970
	CRR073313	Silver flowering 2	1121.046
	CRR073314	Silver flowering 3	965.458
	CRR073315	Gold flowering 1	64.343
	CRR073316	Gold flowering 2	52.831
	CRR073317	Gold flowering 3	37.916
	CRR073318	Tawny withering 1	9.692
	CRR073319	Tawny withering 2	6.857
	CRR073320	Tawny withering 3	9.327